MmuINT0050790 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117902721-117903558:-
Coord C1 exon
chr11:117903394-117903558
Coord A exon
chr11:117902862-117903393
Coord C2 exon
chr11:117902721-117902861
Length
532 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CCCCCTTTGTCTGTCTCGAGGTC
3' ss Score
4.63
Exon sequences
Seq C1 exon
GCAAACCTCACCAAATCTCAGAATGAGTTCAAGATTGTGCTAAAGGAGCTAGAAGATTCTCTGCTGGCTCGGCTATCCGCTGCGTCGGGGAACTTTCTGGGAGATACTGCCTTGGTGGAAAACCTGGAGACCACCAAGCACACAGCCAATGAAATTGAGGAGAAG
Seq A exon
GTAGGCCCGTCCCCATAGGGACACACAGAAGGCTTGACAGCCAGCTGCACGAGTACACCAGGGTGCCTGTGACAGTTTTTGTGAGTTTCAACAAAGTCATAATGAGGAATTAAGTAGTTCAGGTTGTCCCATGGGTATGTCTGTGGGGGACAATCTTGATTGTTAAATGATGTGGGAAGACCCACCCCACTGTGGGTGGCACCATTCCCTAGGCAGGCAGTCCCAGAGAGTATGAATAAGAAGGAGGCTGGCTGAGTTGCTCTTAATTTTGGATGTGATACTCCTAAGCTCTGCCTTGACTTCCCCACAATAGGCTGTCACCTGGAACTGTTAGCCAATCCAACCCCTTCCTCTGGCCAAGTCACTTTGCCACATTTTATTACAGCAACAGACAGAGGGAGCTAGCATCCTGCTACCTGAAAGGCCTTCTAGGGAACTTGGGAGGAATGAAGGCCTGGGACAGAGTGGGGTCTTGATGTGAGTGGCTTGTCTCCCTGGTGGTTCCCTCCAAGCCCCCTTTGTCTGTCTCGAG
Seq C2 exon
GTCCAAGAGGCCAAAATCACAGAAGTAAAGATCAATGAGGCACGAGAGAACTACCGCCCAGCCGCAGAAAGGGCCTCCCTTCTCTACTTTATCCTGAACGACCTCAACAAGATCAACCCCATCTACCAGTTCTCGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:67
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACCTCACCAAATCTCAGA
R:
AGCGAGAACTGGTAGATGGGG
Band lengths:
302-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: