GgaINT1011533 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10091998-10092374:+
Coord C1 exon
chr18:10091998-10092162
Coord A exon
chr18:10092163-10092233
Coord C2 exon
chr18:10092234-10092374
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CCGCACTCGTGTGCCTCAAGGTG
3' ss Score
5.26
Exon sequences
Seq C1 exon
GCGAACCTCACGAAAAGCCAGAATGAGTTCAAGATCCGCCTGAAGGAGCTGGAGGACTCCCTGCTCGCCCGGCTCTCCGCCGCCTCGGGGAACTTCCTGGGGGACACAGCGCTGGTGGAGAACCTGGAGACGACGAAGCGCACGGCCATGGAGATCGAGGAGAAG
Seq A exon
GTACCTGGGCAGTGCGGGCACCCGGCGATGCTGCGGGGCACGGCCGTAACGCCGCACTCGTGTGCCTCAAG
Seq C2 exon
GTGAAGGAGTCCAAAGTCACAGAGGTGGAAATAAACGTGGCCAGGGAGAACTACCGGCCAGCAGCAGAACGAGCATCCCTGCTGTACTTCATCCTGAGCGACCTCAACAAAATCAACCCCATCTACCAGTTCTCCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGGAGCTGGAGGACTC
R:
CCCTGGCCACGTTTATTTCCA
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]