RnoINT0048837 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107050776-107051644:-
Coord C1 exon
chr10:107051480-107051644
Coord A exon
chr10:107050917-107051479
Coord C2 exon
chr10:107050776-107050916
Length
563 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CGCCTTTTGTCTGTCCTGAGGTC
3' ss Score
1.53
Exon sequences
Seq C1 exon
GCAAACCTCACCAAATCTCAGAACGAGTTCAAGATCGTGCTAAAGGAACTGGAAGACTCCCTACTGGCTCGGCTGTCAGCCGCGTCGGGGAACTTTCTGGGAGACACTGCCCTGGTGGAAAACCTAGAGACCACCAAGCACACAGCCAATGAAATTGAGGAGAAG
Seq A exon
GTAGGCCTGTCCCCATAGGGACACACAGAAGGCTAGCCAGCCCACTGCTTGAGTACACCCGGGTACCTGCAACGGTTTGTCGTGACTTTCAACAAAGTCATAATGAGGAATTAAGTAGGCCAGGTTGTCCCACAGTTATGTCTGTGCAAGACATTCTTGATTATTAACTGGTGCAGGAAGACCCACCCCACTGTGGGTGGCACCATCCCCTAGGCAGAGTGTCCCAGAGCATGTGAGTGAGAAGAAGGCTAGCCGAGTGTTGACACGAGCCTTTTCCTCTCCCTGCTTATGATTTTGGATGTGATGCTCTTAAAGTTCCTGCCCTGACTTCCCCACAATAATAGGCTGTTGCCTGGAACTGTAAGCCAGAACAATTCCTTCCTCCCGCCAGGTTGGGACATTTTATCACAGCAATAGACAGAGGGAGCTAGTGGCATCTTGCTGTCTGAAAGGCCTTCTAGGGGACGTGGGAGGAATGAAGGGCTGGGGCAGAAGTGGGGCCCTCGTGTTGAGTGGCTCGTCTCCCTGGTGGTTCCCTCCAAGCGCCTTTTGTCTGTCCTGAG
Seq C2 exon
GTCCAAGAGGCAAAAATCACAGAAACAAAGATCAATGAGGCGCGAGAGAACTACCGCCCAGCGGCCGCAAGGGCCTCCCTGCTCTACTTTATCCTGAACGACCTCAACAAAATCAACCCCATCTACCAGTTCTCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACCTCACCAAATCTCAGA
R:
AGAGAGAACTGGTAGATGGGGT
Band lengths:
302-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]