MmuINT0050807 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69515621-69516111:-
Coord C1 exon
chr11:69515982-69516111
Coord A exon
chr11:69515804-69515981
Coord C2 exon
chr11:69515621-69515803
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
CGTGTCCCCTTGTTGCTTAGGCC
3' ss Score
7.9
Exon sequences
Seq C1 exon
ATTCCGTGGTGGTATCAAGGACCTGGAGGTGATGACCCAGAATCTGATTACCTCGGCCTTTGAGTTGGTCCGGGACGTAGAGCACGGAGTGCTGCTCTTGGACACTTTCCACAGGCTGGCCACTCGGGAG
Seq A exon
GTGCGACACCCCCACCTCGTTCAGCCGACTTTTCTTATTTCCCTCGTTCCGATTCCCTGGCTTCCACATCTGCAAAGAGTGTGCCTGCTGCCGTGTGCCGTGTGGGGGTGAGAGGTTCTTCTGGGATGAGAGACCAAGGGAGCCCTAGCCCCAAGGAGCGTGTCCCCTTGTTGCTTAG
Seq C2 exon
GCCATCATGCGAACCTATGAGAAAAAGGCTGTCGACCTCTACATGCTGTTCAATAGTGAGTTAGCCCTGGTGAACCGGGAGCTGAACAAGAAATGGCCATATCTGGAGCCATACATGACTCAGTACTCTGGACAGGCCCACTGGGTGCGGATCCTTCGGCGACGCATAGACAGAGTCATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.0=100)
A:
NA
C2:
PF083857=DHC_N1=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGGTGATGACCCAGAA
R:
GGCCTGTCCAGAGTACTGAGT
Band lengths:
247-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types