RnoINT0048860 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56119848-56120370:-
Coord C1 exon
chr10:56120241-56120370
Coord A exon
chr10:56120031-56120240
Coord C2 exon
chr10:56119848-56120030
Length
210 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
TGTGTCCTTTTGTTCCTCAGGCC
3' ss Score
11.22
Exon sequences
Seq C1 exon
ATTCCGTGCTGGTATCAAAGACCTGGAGGTGATGACCCAGAATCTGATCACATCAGCCTTTGAGTTGGTCCGGGATGTGGAGCACGGAGTGCTGCTCTTGGACACTTTCCACAGGCTGGCCAATCGGGAG
Seq A exon
GTGCGCACCCTCGCTTCAAGGGCCTGCCTGCCCGTGTCCTTTTTCCTCATTCAGCTGCTGACTTTTCTTTTGTTCCCTCTTTCTGATTTCTGGCTTCCATATCTCTGAAGAGTGTGCCTGCTGCTGTGTGGGGGGTGCCAGAAAAAACGTTCTTCTGGGATGTGAGACCAAGGGACCTACCTCCAAGGAATGTGTCCTTTTGTTCCTCAG
Seq C2 exon
GCCATCATGCGAACCTATGAGAAGAAGGCTGTTGACCTCTACATGCTGTTCAATAGCGAGTTAGCCCTGGTGAACCGGGAGTTGAACAAGAAGTGGCCATACCTGGAGCCGTACATGGCTCAGTATTCCGGACAGGCCCACTGGGTGCGGATCCTCCGGCGTCGCATCGACAGAGTCATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGGTGATGACCCAGAA
R:
GTTCATGACTCTGTCGATGCGA
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]