MmuINT0050832 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69290118-69290850:-
Coord C1 exon
chr11:69290662-69290850
Coord A exon
chr11:69290222-69290661
Coord C2 exon
chr11:69290118-69290221
Length
440 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCG
5' ss Score
2.19
3' ss Seq
ATTCTTTTCTGTTCTTCCAGGAT
3' ss Score
10.63
Exon sequences
Seq C1 exon
GTGTCAATACTAAATAAGTATTCAGAGGCCATCAGGGGGAACTTGACCAAGATCATGAGACTTAAGATTGTGGCTCTGGTGACGATAGAAATTCACGCCCGCGACGTGCTGGAAAAGCTCTACAAGAGCGGCCTCATGGATGTCAGTTCCTTTGACTGGCTCAGCCAGCTGCGCTTCTACTGGGAGAAG
Seq A exon
GTGGCGAAGACGGATCGACTCGCTCCTCTCTTAGGCCCAGACTGACCCATCATGCTTCTGTGCATGGACGCGTGCTATCTTCTAACCCAGACCCTTGGACTTTCAGAGCTTCCTCCTCGAAGGTTTAGCTCTGTCGCAATCCCAGCTCAGGAGTGGCCAGTGGTTACTCCAGGCAATACTCCTTCTAAGTGCCACTTGATGGCCACTCTCAGATCCCAAGCAGCTATTTCCATGGATTGGGGTGGGGGAAGACATGCTGTGTGGAACCCATTTTCTCTTGTGGCCCCAAACCATACCCTTCTCTGTAGCTCTAAACCAAAACCCTTAATCCACCTGCAACCCTCCTGACGTCTCTGAGCCCTGCTGGTAGCCATTTCCACGTTCCCTGAAGCCCCGCCCCTGAAGCCCCGCCTCTGTCTCATTCTTTTCTGTTCTTCCAG
Seq C2 exon
GATGTGGATGACTGTATAATCCGCCAGACCAACACACAATTCCAATATGGTTATGAGTACTTGGGGAACTCTGGTCGGCTGGTCATCACTCCCCTGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(17.3=62.5)
A:
NA
C2:
PF127742=AAA_6=PU(8.2=54.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCAGAGGCCATCAGGG
R:
CTGTCTGTCAGGGGAGTGATGA
Band lengths:
278-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: