RnoINT0048885 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56086547-56087239:-
Coord C1 exon
chr10:56087051-56087239
Coord A exon
chr10:56086651-56087050
Coord C2 exon
chr10:56086547-56086650
Length
400 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GTCTTATTCTGCTTCCCCAGGAT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GTGTCAATACTAAATAAGTATTCAGAGGCCATCAGGGGGAACTTGACCAAGATCATGAGACTTAAAATCGTGGCTCTGGTGACAATAGAAATTCATGCCCGTGATGTGCTGGAAAAGCTCTATAAGGGTGGCCTTATGGATGTCAATGCTTTTGACTGGCTCAGCCAGCTGCGCTTCTACTGGGAGAAG
Seq A exon
GTGTGCAATGCATCAACTTGCGACTCTCTTAGGCCCAAACTGACCCACAGTGCTTTTCATGCATGGACACGTGCTATCTTCTAACCCAATCCCTTGGACTTTCATAGCTTCTTTCTCGGAGGTTTAGCTCTGTCTCAATCCCGATTCAGGAGTGGCCAATGATTGCTCCAGGCAATACTCCTTATAAGTGCCACTTGATGGTGGCTCAGACCTAAGCCACTCTTTCCATGGATTGGGATCAGGGAAGACGTGCAGTATAGAGCCCACTTTCTCTGGTGGCCCAAACCATCCCTAAACCGGAACCCTTAATCTATCTGCAGCCATCTGACTTCTCTGAGTCCTACTGGTAGCCATTTCCACATTACCCTAAGCCTTCCTCTGTCTTATTCTGCTTCCCCAG
Seq C2 exon
GATGTGGATGACTGTATAATCCGCCAGACCAACACACAATTCCAGTATGGCTATGAGTACTTGGGGAACTCTGGTCGGCTGGTCATCACTCCCCTGACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=54.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCAGAGGCCATCAGGG
R:
CTGTCGGTCAGGGGAGTGAT
Band lengths:
278-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]