MmuINT0050855 @ mm9
Intron Retention
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69266320-69266830:-
Coord C1 exon
chr11:69266663-69266830
Coord A exon
chr11:69266481-69266662
Coord C2 exon
chr11:69266320-69266480
Length
182 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CCCTTCACTTGTTTGGCCAGATA
3' ss Score
6.91
Exon sequences
Seq C1 exon
TCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACG
Seq A exon
GTAAGGCTGGGTTCCTGACCATGCGCAGAGGTTTCAGGATGAAAGATAAGCTGCTTGAGTTACTGGCCCTGGCCTTTGTGTTCTGGGAGTGCTTATGGCTGTGGGAGGGTCCTCCAACTGAGAGGCTCAGGATGGGGAGTCGCAAGTAAGTCTTTTCCTTCGCCCTTCACTTGTTTGGCCAG
Seq C2 exon
ATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-Dnahc2:NM_001081330:54
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.7=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTTGCTGGTGGGGATC
R:
GCCCGAGCTAAGGATGTTGTT
Band lengths:
252-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: