RnoINT0048908 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56062292-56062820:-
Coord C1 exon
chr10:56062653-56062820
Coord A exon
chr10:56062453-56062652
Coord C2 exon
chr10:56062292-56062452
Length
200 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGG
5' ss Score
8.47
3' ss Seq
CCCTTCACTTGTTTGGCCAGATA
3' ss Score
6.91
Exon sequences
Seq C1 exon
TCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGCTGCTGGTGGGGATTGGAGGCAGTGGAAGGCAGAGTCTGGCCCGCTTAGCCTCTAGCATCTGCGAGTACAACACATTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACG
Seq A exon
GTATGGCTGGGATCCTGAACGTGGGCAGAGGTTTTAGAATGAAAGAAGCCGCTTGAATTACTGCCAGGCCTGGTGGTGAGATAGCCCTGGCCTTTGTGTGCTGGGAGTGCTTATGGCTGTGGGAGGGCCCTCCAGCTCAGAGGCTCAGAGTGGGGAGTCTGAAGTAAGTCTTTTCCTTTGCCCTTCACTTGTTTGGCCAG
Seq C2 exon
ATATCAAGCGCCTGTATCGCCAGGCAGGGGTAGAACTCCAGGCCACGTCTTTCCTTTTTGTGGACACCCAAATAGCCGACGAATCCTTCCTAGAGGACATCAACAACATCCTCAGCTCAGGCGAAGTCCCCAACCTCTACAAGGCTGACGAGTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.7=100)
A:
NA
C2:
PF127802=AAA_8=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGATCGTGCGTGTGATC
R:
TGTAGAGGTTGGGGACTTCGC
Band lengths:
306-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]