MmuINT0051039 @ mm9
Intron Retention
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:72974248-72975004:-
Coord C1 exon
chr6:72974819-72975004
Coord A exon
chr6:72974321-72974818
Coord C2 exon
chr6:72974248-72974320
Length
498 bp
Sequences
Splice sites
5' ss Seq
GACGTACGG
5' ss Score
5.37
3' ss Seq
AAATCATGTCTCTCCCCCAGCTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
ATCTCTCTAGAAACACTCAACAAAGCCATTGCTGGGCTTGTGGTGATGTCTGAAGAAATGGAAAAAGTGTATCAGAGTTTCCTGAACAACCAGGTTCCCTCTCTTTGGTCTAACACGGCCTACCCATCCCTGAAGCCACTGGGATCATGGGTCAAAGACCTTATTCTGAGGACTGAGTTCGTGGAC
Seq A exon
GTACGGAAAACTTCACATGCCTGGGATTTGATGGGTTTGACAACATGGCTGTCCCTCAACTCCCAGGGGTCTCTGAGCAGCAACAACTGGGAATTATTTGATGCCAGAGAAACAGAACCTTCCAGAATGGCTTCCCTTTGAAAGCCTTAAGCCAATCATAATGCCATTTCCCCTAGGCTTTTATCTATATGTTGGTTTCCAACCCCAGGCCACTCGTGAGGTTTTAGCTGCAGTGTATGGCCCCTCTGTAAGGCACAAACCACCACATGTCTCCACACAGCCACATGTACCTTGGCTGCCCGAGCCTCTTGTCCCTTGTGGCTCCAGGCTTACAGTCAAAGCTGGGAGATAAGAAGGGGCACAGACCAGCAGTAAGAAGACAGAGGGTAATTCAGGATTCCATCAGACACCACTCCCCTCCCAACACAGCCCTGACTTTAGATGGCAGACCCCACCTCAGAAACAAGAGTGCCTCATGAAATCATGTCTCTCCCCCAG
Seq C2 exon
CTGTGGCTCAAACGAGGACAGCCTAAATCCTTCTGGATTTCGGGGTTCTTCTTCCCACAAGGATTTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-Dnahc6:NM_001164669:73
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCTAGAAACACTCAACAAAGCC
R:
CTTGTGGGAAGAAGAACCCCG
Band lengths:
246-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: