MmuEX0015010 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:72972333-72975004:-
Coord C1 exon
chr6:72974819-72975004
Coord A exon
chr6:72974248-72974320
Coord C2 exon
chr6:72972333-72972484
Length
73 bp
Sequences
Splice sites
3' ss Seq
AAATCATGTCTCTCCCCCAGCTG
3' ss Score
8.14
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATCTCTCTAGAAACACTCAACAAAGCCATTGCTGGGCTTGTGGTGATGTCTGAAGAAATGGAAAAAGTGTATCAGAGTTTCCTGAACAACCAGGTTCCCTCTCTTTGGTCTAACACGGCCTACCCATCCCTGAAGCCACTGGGATCATGGGTCAAAGACCTTATTCTGAGGACTGAGTTCGTGGAC
Seq A exon
CTGTGGCTCAAACGAGGACAGCCTAAATCCTTCTGGATTTCGGGGTTCTTCTTCCCACAAGGATTTCTCACAG
Seq C2 exon
GGACCCTCCAGAACCACGCTAGAAAATATAATTTGCCTATAGACGAGCTGAGTTTCAAGTATAACATGATCCCAGTCTACCGAGACCAAGCTGCAGTGATAGAATCAGCCAAGGACATTCAATTTGGAACAGAACTGCCCATGGACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'75-76,'75-75,76-76
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.2=100)
A:
PF0302810=Dynein_heavy=FE(3.2=100)
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTTGTGGTGATGTCTG
R:
TTCTAGCGTGGTTCTGGAGGG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: