RnoEX6013951 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100942379-100945584:-
Coord C1 exon
chr4:100945399-100945584
Coord A exon
chr4:100944841-100944913
Coord C2 exon
chr4:100942379-100942530
Length
73 bp
Sequences
Splice sites
3' ss Seq
AAACCATGTCTCTCCCCCAGCTG
3' ss Score
8.58
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTTCTCTAGAAACACTCAACAAAGCCATTGCAGGACTCGTGGTGATGTCTGAAGAAATGGAAAAAGTGTATCAGAGTTTCCTCAACAACCAGGTTCCCTCTCTTTGGTCTAACACAGCCTACCCATCCCTGAAGCCACTGGGATCATGGGTCAAAGACCTTATTCTGAGGACTGCATTCGTGGAC
Seq A exon
CTGTGGCTCAAAAGAGGACAGCCCAAATCCTTCTGGATCTCCGGGTTCTTCTTTCCTCAAGGATTTCTCACAG
Seq C2 exon
GAACTCTCCAGAACCATGCTCGAAAATATAATTTGCCTATAGACGAGCTGAGTTTCAAATATAACATGATCCCAGTCTACCGAGATCAAGCCTTGGTGATAGAAGCAGCCAAGGACATTCAGTTTGGAACAGAACTGCCCATGGACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'76-81,'76-80,77-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.2=100)
A:
PF0302810=Dynein_heavy=FE(3.2=100)
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGACTGCATTCGTGGAC
R:
CTCCTTGTCCATGGGCAGTTC
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]