MmuINT0053331 @ mm10
Intron Retention
Gene
ENSMUSG00000059898 | Dsc3
Description
desmocollin 3 [Source:MGI Symbol;Acc:MGI:1194993]
Coordinates
chr18:19971378-19973926:-
Coord C1 exon
chr18:19973784-19973926
Coord A exon
chr18:19971603-19973783
Coord C2 exon
chr18:19971378-19971602
Length
2181 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTGTCCCTTTCCCTTCTCAGAGG
3' ss Score
10.72
Exon sequences
Seq C1 exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCGGGGTTGCTTACCATATCAAAAACCCTAGACAGAGAAATAATGGCTCCAAGAAATGACATGTACAATATTACAGTCATGGCAATTGACCAAG
Seq A exon
GTAACAAAAGTATTAATTTGGTATTTTATAAAATAATTGAAGAATACATTGTAATTATCCTTATGGTGAATAAATATTATGGTAAATATACAGACTTCTTGAACATTACCTCAAGACTAGTATTTCTCTTGTCCTAGGAGATGACTTTGGCGAGAAGACACCATTTATTTCTGGTTTTGTATGTTTTGTTGTTTTGGTTTGTTTGTGTAGCCAAAGGTGCTTTTAAATTCACCATACAGCCAAGGATGTCATTTCTCGTTCCTGATCCTCCTACCTCAGCATACTGAGTGCTACAGGGTTGCACTCCACACTAGGAAAAATGCTTTTGTTGTTGACATAGAGTCTTATTCTATAGCCCAAGATGACTCAAGTCCATTATATAACTCAGGCTCGTCTTTAAGTTGTGGCAATTCTCCTGCTTTAGCCTTGCCCATGTTGGGTTTATAAGTGTGAGCCATCATGTCCAGCTAAATAACACACATCCTATTTATCTTTATAGTCTATCTGCAAGAACTTAGTTCTTGCACGGTTTTGTGGCAAAGGACAATGATCAAACTTAACCATGAGACTAGATGAAGTGGTCTCCTCAGACTCTTTACATATCTTTGTATCACTTTACCTGAAGGCTTCCCCATTCATTAATTAATTTTCAATAAAGCAATTCATTAAATTAATTAAATTTACATGCTGATCGAAGATTCCCCTCCCTCATCTCCTCTCAGTCCCTCCCTCTCAAATCCCCTCCTCCCCATTCATTTACCCCTTCTTCATAAAAGGTGTGGCTTCCCATGGATAATCAACCTGCATATCAAGTTGCAGTGGGACTAGGCAGGACCAGGCAGCCCAGTTAGGGCAAAGTCAGGCAAGAGTTGTTAAGGGTCTCACATGAAGAGCAAGCTGCTCATCTGTTACATATGTGTAGAGGGGACTAGGTGTGTCCCATGAATGCTCTTTGGTTGGCGGTTCAGCTTCTGTGAGCTTCTATGGGGCCAGGTTAGTTGACTCTGTAGATTTTCTTGTGGTGTCCTTGATCTCTCTGGCTCCTTCAGTATTTTCTTACCCTCTTCCTCAGAACTCCCAGAGTTCTGCCTAATGCGAGTCTTTGTACCTGTTTCTATCAGCTGCTCAGTGAAGCCTCTCAGAGGGCAGTTATGCAAGGCTCCTGTCTGCAAGTTTAGCAGAATATCAAATAGCGTCAGGGGTTGACTCTCTCATGGGATGGGTCTCAAATTGGGTCAGTCATTGATTGGCCATTCCCTCAATTTCTGCTCCATCTCTATCCCTGTACATCTTTAAGCAGGACAAATTTTAGATGGAAGTTTTTGTGAGTAGGTTGGTATTCCCATCTCTCTTTTACTCATTCAGCTAATTATTAAATCCTTCTAAACTTGAATTTTAGTTTTTAAAGTACATTTCCTCTATCCATGGCTTTATTTTAAATAACAATAATTTCAATGTGTTATATTACCCCATACTCATTGAATTAGAACCTTTGGTTGTGAAGCTTTTATGTAATATATTAAAACCTCCCTATGGGTTTGAATGTAACATGGGACTAGAATAATATTTCTATAACCACTTCATCATGACTCATTAACATCCATGAGTCCAAGGAAAGAGAGCATTCAATTCACCATTTACTTCTATTGTTTATAGCAATTCTGGCAAAGGGCTTGTTGAAACTTGTATCCGATAGTATCATCAGCAGGAGCCATCTTAATCTGTAGCTTTTATTCATTTATATTTTTATTACCCATTCATCTAATAACCAAAGATTATATTTTCAGGAAATATAGATTCTCTCTGTTACACTCAGTAACCCATGCTTCCATATGGCATGCTCCAGTAGTCACAAGAGCTGAGAAATAGAGCTAGCTTAGATGACCATTATGGATAAAGAAAACATGTTACATATACACAATGGAAATTCATGTCTCTGTAAAGAAAAATAACTAGTGACAGTTGCAAGAAATGGATACAAGTGGGATTCATTATGTTAAGAGAAAAGTGCTAGATTCAGAAAGACAAATACCACATATTTTCTCTCATGAGTTGGACCTAGATTTAAAATTATGTATTTGTGTGTATATAAAAATAGAGAGTAAGATTTACTTTGCTTTTTGGAGACTCTACGATAGGAATCTGAGACCAGCACTGAGACTTGTCCCTTTCCCTTCTCAG
Seq C2 exon
AGGGTAAATCATGCACAGGAACACTTGCAGTGAACATCGAGGATGTGAATGACAACGCACCAGAGATAATTCAAGATTATATTGTTATCTGTAAGCCAAAGATGGGGTACACGGACATTTCAGCTGTGGATCCTGATGAACCTATCCATGGCCCTCCCTTTCAGTTCAACTTGGCAAACACTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059898:ENSMUST00000115848:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
NA
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types