RnoINT0051294 @ rn6
Intron Retention
Gene
ENSRNOG00000017159 | Dsc3
Description
desmocollin 3 [Source:RGD Symbol;Acc:1311782]
Coordinates
chr18:11762966-11765573:-
Coord C1 exon
chr18:11765431-11765573
Coord A exon
chr18:11763191-11765430
Coord C2 exon
chr18:11762966-11763190
Length
2240 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TTGTCCCTTTCCCTTCTCAGAGG
3' ss Score
10.72
Exon sequences
Seq C1 exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCAGGATCACTCACCATATCAAAAATCCTGGACAGAGAAATCATGGCTCCAAGAAATGACCTATACAATATTACAGTCATGGCAATTGACCAAG
Seq A exon
GTAATTAATATAAAGTATTAATTTAGTATGTTATAATAGAATGGAAAAATAAATTGTAATTATTCTTATGGCAAATTAATATTATGGTAAATATACACAATTCTTGAAAATTACCTCAAGATTAGTATCTCTCTTGTTGTCTGAGTAGATGACTTTGGTGAGAAGAGACCAATTATTTCTGGCTTTGTTTTTGTTCTGTTGCTTTGGTTTGTTTGTGCAGCCAAAGCTGTTTTTAAATTCACCATATAGCCAAGTGTGAACTTTGTCATTCCTGATCCTCTTGCCTCAGCATACTGAGTGCTACAGGGTTGCACTCCATGTTCAGAAAGATGTTTTTGTTGTTGACATAGAGCCTTATTCTGTAGCCCAAGATGGCTCAAGCCTACTACCTAACTCAGGCTGGTCTTTAAGTTGTGGCAATTCTCCTGCCTTAGACGTCCCTGTGTTGGGTTTATAAGTGTGAGCCATCACGTTCAGCTAAATAGCACATATCCTACTTATGTTTCTAGTCCATCTGCAGGAACTTAGTTCTTGCACAGCTTTGTGGTAAAGGACAATGATCAAACATAACCATGAGACTCGATGCAGTGGTCTCCTCAGACTCTTCATGAAAGTTTGTGTTACTTTACCTGGAGGCTTCCCCCATTAATTAATTAATTTTCAACCAAGCAATTAATTTTAGTTAATTAATTTTTACTTAATTTACTTTACATGCTGATCACAACTTCCTCTCCCTCATCTCCTCCTTGTCCCTCCCTCTCACATCCCCTCCTCCCCATTCATTTCCCCCTTCCTCAGGGAAGGCATGGCTTTCCAAGGATATCAACCTGCCTCGGTGTATCAAGTTGCAGTGTGATTAGGCAGGACAATACAGTCCACTTAAGGGAAAGGGACCCCAAGGCAGATAAAAGTTATTAGGGTTCCCACATGAAGACCAAGCCGCACATCTGTAACATGTGTGGGGAGACTAGGTCTGTCTCATAAATGCTCTTTGGTTGATGGTTCATCTTCTGTGAGCTATGGGTGCAGGCTAATTGATTCATTGATTCTGTAGATTTTTTTTGTAGAGTCCTTTGACCTCTCTGGCTCCTTTGGTATTTTCTCCCTCTTTCCCTTATAATTCCCAGAGTTCTGCCTAATGTTTGGCTGTGGGTCTCTGCATCTGTTTCCATCAGCTGCTGGGTGAAACCTCTCAGACGACAGTTATGCTAGGCTCCTGTCTGCAAGTATATCAGAATATCAAATAGTGTCAGGGGCTGACTCTTTTTCATGGGATAGATATCAAGTTGGGTCAGTCATTGCTTCGTCATTCCCTCAATTCCTGTCCCATCTTTATTCCTACACATCTTGTAGGCAGGAAAAGTTTTAGGTGGAAGGTTTTGTGAGTAGGTTAGTATCCCCATCTCTCTCTGACTCATTCAGCTGATTACTAAATCCTTCTAAACTTGGATTTGAGTTTTTAAAGTAAATTTCCTTTCCTCTGGCTTTATTTTAACCAGCAATAATTTCAATGTGTTATATTACCTTGTACTCATTGAATTAGAATCTTTGGTTGTGGAGCATTTATGTAATATATTAAAACCTCCCTATGGGTTTGATGCAACTTGGGACTAGAATAATATTTCTATAACCACTTCATTATGACTCATTAACATCCACGAGCCCAAGGAAAAAGAGCATTCAATTCAGCATTTATTCCTATCATTTATAGCAATTCTGACAAAGGGCTTGTTGAGACTTGGCTATGATATTAGCATCAGCAGGAACCATCTTTGACAATCTGTAGCTTTTACTCATGTATATTCTTATTCCCCATTCATCTAATAACTGGAGATTATATTTCAGGAAATATTGATTCTATCTGTACCAGTCAGCAACCCATGTCCCCATGTGACAATGTGCGGTAGTCACAGGAGCCGGGAAAGAAACCTAGCTTAGATGGCCATCACGGATAAAGAAAACGTGCTATATACGTACGATGGGATTTCATGTCTCTGTAAAAAAAAGTAAATAGTAACATTTGCAGGAAGTGGGCACAACTGGAATTCACTATGTTGAGAAGAAAAAGGCTAGACTCAGAAAGACAAATTCGACATGTTTTTTCACGTGTAGGACCTAGATTTAAAACTACGTATTTGCGTGTGTGTCAACATAGAGATTAAGACCTTTTTACGTTGGAGAGATGACTCTAAGACAAGAATCTGAGACCAGCACTGAGCCTTGTCCCTTTCCCTTCTCAG
Seq C2 exon
AGGGTAGATCATGCACAGGGACGCTTGCAGTGAACATTGAGGATATGAATGACAACGCACCAGAGATAATTCAAGATGACATTGTCATCTGCAAGCCAAGGATGGGTTATACAGACATTTCAGCTGTGGATCCTGATGAACCTATTCACGGCCCTCCCTTCCAGTTCGCCTTGGCAAGCTCTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017159:ENSRNOT00000064554:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
NA
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]