MmuINT0053431 @ mm9
Intron Retention
Gene
ENSMUSG00000069441 | Dsg1a
Description
desmoglein 1 alpha [Source:MGI Symbol;Acc:MGI:94930]
Coordinates
chr18:20491981-20494539:+
Coord C1 exon
chr18:20491981-20492310
Coord A exon
chr18:20492311-20494402
Coord C2 exon
chr18:20494403-20494539
Length
2092 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTCACCCCTCTCTACTTCAGTGG
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATTCCCTTCAGAGGACCTGCACGGGGACAATCGTCATTGAACTTAGTGGCACTGGCTGGGTAACTGGTTCAGAAAGTGGTGGCAGTTCCAGTGGCAGTGGCGATGATCGTGACCGAGTGACTAATGGATATCAAGGCACTTCTTCCACTGAGAACCCACAACGCGTCACAGGATCATGGGGAGGCAGCGGCATCGATGGCACTCGCCCTAACACTAACCCTTTCCAAGGGGATCCTGATGAAACCCTTGAGACCCCTCTCTATGGAGACAACGTTCACTTCGGTCCTGCAGGCATCGGGCTGCTCATCATGGGGTTCCTAGTCTTAGGAT
Seq A exon
GTAAGTGTTTCAATCCTACTTTTGACATGTGTCTCTCAAACAATATGGCAAAAGAAATCAAACAGCCTATGTATTCAATCTATGTGTCTATAAGCATTGCCTAACCAGTTGTTCCGAGTTTTGCTGTTGTTCTTTTTTACCTCACAGCATCTCTAGATGAGGAGAGGTCCCATAGGTGAAGGCTATGGTACATTTGGGGCCACTACAGTAGCCTTAGTCATGGACAGAAAGACAAACATAGAGTCCAAGGGGTCTTCCTGGTGGAATTTAATATTGCCCTAAATTATGACAGAAACTCAACTGGAAATCGGGGAGTACCTTGGTGCCTACACACTGTTACTAAGTTAATATGAACAATGACATTTGCAGCTAAGCATGGTGGCACACACCTACTATCTAAGCAGTTGGGAGGTTTCTTTTTCAATTGTAGACTCATAAAATATTGGTAGTAAAACAAGCTTCACATACTTAATTAATTAACCACAAAATGTACATTGAAAGAATTCACAAAATTTTAAAATATTTTCTACATTAATTTCTCTGTTTAAATATATTTATTTTTATTTTATGTTTCAAAGTTTTGGTTGGTTTTTTGTTTGTTTGTTTGTTTTTGGTTTGTTTTGGTTTGTTTTTGCCTACATGAATTTAAGTATAAGCTCATGGGCCTGGTCCACGAACTCCTTGCAACTGAAGCTGTGGATCGTTGAAGCTGTGAATCACAGTGCAGATGCTGGGAACAGAATCCTAACCGTGTGACAGCGCTTCACCACCCAAACAGCCCCTCCTCGTTGGTCTCTTAACAAGTGACTAGATACTACTTCACTAGGTTTTCTCTGACTTTAAGTAACCCACCTTTTGGAACTTTTCCTCAGCATACATCCATATAAACCACAAAGAAATATGAACACACTGAGAACATAGTCTAAAGTGGAGCACTTTCTCTAGAATGGGAAATACACTTCAAAAAATGAATTTTCTGTGTTAAATAACAGGAACTCCCCCATATTGGCTCATAACAAATAGAAATAAGAACCAGGAAATGTCGTATGAAAAAAATCATAAGTTTGAAATGGATTTTTCTCATCAAAATAAACCCAATCAAGGACGATGCAAGAGTGTTAGCAAACTTGAGGAACCCAGTGTGAGCTACATGGAAGCAGAAATACTTCTCTACACTTTGTAGTCAGGTCTTTGCTTTATTAAAGCAAACTAAACACCAAAGAGCTGATGATGATTGCTAGAAAGAACAGCTAGATTTCATTTTCACTTTCCCTAATATCAATGTCTACTATCAGACAGTGTGGCTAATGAATGCTTTCAATGTTGTATACGACCCTTTGGGTCAATAACTTTACATTTAATTTCTTTGCTCTATCTTACAGATTTCCCCAAAAAAGCAAAGCTAGTTGGGGATTTTAGGTTTTTGTTGTTGGTGTTGTTGATGTTGTTATTGTTTTCCTCTCTTATCTCTGCCCTCCCCTCTTCTCTGCTTTAATTTTTCCTTCAATTGTTTACACATTCTTGTTTTTTATCTTTTCATTCAGAATTATCTAGCCAGATTGTATGACAATAGTAAATAAATTAAAATCTGAAACAGATTAGAGAGAAAAGACATTCCTAATGTGTGATACTCTTTATAGGAGAGTTGTCTAAAGACAAATCTCTGTAGCAGGAAAATAATAACCTTCCTAAGAATAACTGATAACTGAATGAGATTTTCCCTTAAAATAGAGAAAGAGAATGTGTGCAAACTGAAAGTAAATGCAGGCAGGAAGGATCAGAACTGATGCCTGCCTTCAGCTTTCTTACTCTCTGCTGCTTTCTGTGTGATGGTAGGGAAAAGAATCACCTATTTTAATTTATGATTTGATTTACAATTTCAACACTAATAAGCAAATTAAAATTCATGGCAGTCTAGTGTTTCCAAGTTCATGATTATTTGCGGGTCTAACCAATATTAATTGGTTGTCCTGGCATATTAAATAGTGATTTTAAACTCAGACAGCTCAGGAGTTCTCATTTAGCCAGTGAAAATCGGAGTGTTTTCTTTCAACATTGTGCACTGCTAACCCCTCACCCCTCTCTACTTCAG
Seq C2 exon
TGGTTCCATTCCTGCTGATCTGCTGTGATTGTGGAGGGGCCCCTGGTGGTGGAGCTGGATTTGAACCTGTTCCAGAATGTTCTGATGGAGCAATTCACACGTGGGCTGTAGAAGGGCCACAGCCTGAACCCCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069441-Dsg1a:NM_010079:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.413
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(15.8=13.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: