GgaINT0094727 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NTQ4]
Coordinates
chr2:105760574-105762908:+
Coord C1 exon
chr2:105760574-105760863
Coord A exon
chr2:105760864-105762759
Coord C2 exon
chr2:105762760-105762908
Length
1896 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
CCTGTTTCTTTCCTGTTAAGTGA
3' ss Score
7.25
Exon sequences
Seq C1 exon
TGCTGGTGGTGGTGGAGCTGGTGGTGGTGGTGCTGGTGGTGATGGAAGCCAGACTGGTGGAGGAACCGGACAAGACTATGGTGGGACTGGGTATGAAGGAGGTGGCGGCAGTGACTCCAGCACAGACTCGGGTACTGACACTGGTGGAGGATCTACAAATTACGATAGTTATACTGGAACCAGTGATTACGGCAGAAATGAATATCCTGGTGGATACGCCCTACCTGCTTCTACCACACTTAGTGGTTCTGCCATTGGCCTGATGTTTCTCGGTGGATTAATATTTGTTT
Seq A exon
GTAAGTATAAAATTAAGAAAATGGTTATATCAACCTTTTTAAAAGTGCATGTTTTTATTTTTCAGATGACTTTTTTGGTCAGTTGTTTACTCTTGAACTCCCATGGTTAACTCAACAACAACAAAAAAGTTTTAAATTATAAGAATATATTTATATATTTATGTTCTATATATGCACAGATATTTCATTCAGAAATAACCATTTCCATCTGAAAACTTAGGGTTTTTTTCTAAGGTATTTTTCTGTTCTCAGACAACTAGGCAGGGTCAAAATATTTTGCAGCAGATTCAGAAGGTTCTGGGCAAAAGCTGCTTCTATTACTTTACAACATTTGTAATGTAATTTGTTCCGTAGTTACATTACTAAAACAAATAGATCAAGTCAGGTATGAAAAGATGCAAGGAACAAACTTCCTTTGAACTCTAAGCCTGATTTCACTTGCAGAAAGATAAAACTCATCAGTTTAATTTTTTTAATTTTTTGGCCAGTGTTGCTAAATAATTTGTCTGTTAAAAAATGTCTGCAATAACAGGATCAAAGCAGATCATTCATTCATTCACATGTCCTAGTATTTATGAAGAAGCATGAGTTTAAGAGAGAATAATGAGTAAATGAGTAAATCTAGGTTTTATGCAAAATATGAACCTCAGCAATTACTTCCCAGGCCACCACAATCATTCATAATTGTTCTTCTTTCGTGACATGAACATCAAGCAGTGCAGAAATACTGACTACAACAATTCTGGAGACCTGATTTTTTGAGGAGGGTAGTCATATTGGGCCTTGGTCTCTAATTAGTGGGAATCAACAAACAAAATTTTGAAGTTGTAAAAGGCTATCTTGTTTGTAGTTCCCATGTGGTTAATGTTACAGAACAGACTGCCTTTCTGCCTTCAGAAATCTCGTCAGTGGTCTGGAATAAATACATCCTTACTAATGAGGTGTGAAGTAGCACTTTGTGCACTGTATAGCCCTTTTTCTTTACCAAAGAGAAAACTTTGGTATATTTTGATGTTAAAGTGAGAGTTTTAGATACTTTGGTTAGTTTGCTGTAAGCAAACTCCCTGCTAACTCTGCAGGAATACTAATTTACTAACTTAGTTATTTAGGTTAACAGCTTAAACAGAACCAGAATGAATATCGCAGCCCTTTCCTAAAATGAGCAATGTTTTTTTTTGTTGTTGTTGTTTCTTTTGTTTTGTTTTGTTTTTTTTTTTTATGCTAGTTTTTAAAGTATTCAGCAATGTGCAACACTAAATTCTTTCAAGGAATAAACATAATGTACCGCATTGAGAAACCTGACTCGCTCTGTCTAATCATTGGTTAAAACTGGAATTCGGGGTTTGACTGTGTTATTTTTCAAATGAGTATCAAGTACATGTGATGTGGAAATGCAACAGGAGAGTTAGACAAAAATTACTGTAGCCAGACAGATAGCTCTCCACTGATTCTCTTAAGTTTAGTGTTACTAATGTGTATTTCTTTTCAACTACAATGTCTGAAGAGGAAAACGTACTCATCTACATCAAGTGTGAATATCACTGAATGCTATATATAGCAAGACAGGTTTTGTTTGTTTAATTTTCATACATCTGCATCTTATATTCATTCAGTTGAGGCAGATCAAAGTCTGTTTCCAGGTGTATAGGCATAAAATTGGAGTAACAGCTCTACTCCACCCTAATTTTGCTCCGCTATAACTAAAGGCAAAATTATTCTGAGTATCCAAATACATACATTTTCAAAAGCAGCTAATGATTCTGAAAGCTAGACTTGCAGGCTGCTTAGTTTCAAACATTTTGAAATATACATTTTCAAAAGTTCTTGGTCACTTGTAGTCATTCCTATGAAGAAGAGATGTCTTAAATACCTGTTTCCTGTTTCTTTCCTGTTAAG
Seq C2 exon
TGATTCCAATTTTGATGTCAATGAGTGATTGTTGTGGCTGTGGACCTGGAGCTGCAGCTGGAGTTGGAACTGGATTTGAACCTGTACCTGAATGCACAGAAGGGGCAATTCATCCATGGGGAATAGAAGGTGCACAGCCTGAAGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017398:ENSGALT00000036805:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(1.0=1.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACTGGGTATGAAGGA
R:
GCTGTGCACCTTCTATTCCCC
Band lengths:
349-2245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]