BtaINT0052923 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039483 | DSG3
Description
Bos taurus desmoglein 3 (DSG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001192685]
Coordinates
chr24:25984187-25987682:-
Coord C1 exon
chr24:25987425-25987682
Coord A exon
chr24:25984327-25987424
Coord C2 exon
chr24:25984187-25984326
Length
3098 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TTTGTTTTCCTTCATACTAGTGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
CTACATCCGCACTCCTCACAGCCCCACAGCCAGTCTCTCCCGGAGTGTACAGAATCTCCGTCATGGTCACGGACAGTGAGGGGAGGCGGTGCGAGGAACCAGAGAGCTTGACCCTGGAAGTCTGCCAATGTGACTACAGGGACATCTGTCCAAATGTGTATCCAACCAGCATCCCTAATCCCATAATTGGAGAGAGGTCTGGGAGGATGGGGGCTGCCGCCATCGGTCTGCTATTCCTCGGCCTTTTGCTGCTACTGT
Seq A exon
GTGAGTATGCCAGGGGTATGGTAGCATGTGCACGGACAAAGCATCTCTGCAGCTGTTTTAGAGGCAGAGCTCACAGGGTGAGGTGGGCGCGGGGGTGCGCTGACATCTTCAGAAAGACCCAGAAATGTTTAAAGTTAACATATGACTTGCCAACAATCTATATTTATAATACAGCAGAGCAGGTCGTGTATGTTAGACATATAGAAACCAGCAGCAGAGAATCAAAGAAAGGCGAAAAGAAAGCATGGACAGTCTACACACTGCCTGGAATGTTCACGGTCAAAATAATGACTTTATCCAGGATCGCAGTACTTTCTAAAATGTCTTTTCCCTCTACAAGTCTCATGAAATTCTAAAATACAATAGAGTCCTGACCAAAAAAATTTAGGAAAAATTCTAAGATAGCATAAGCTTTGAGCTTTACAATGCACATAAATATATCGCACTCTGAGAAGTTGTTGCTTAATCCAGAATTTCCTCAAAATAGCTTTGCACCTGAAAATACACTCGTTTAAGGCTCAAACTTAATATGATGAAGTTTACTGAATACATTAAGGGACTTTACATACATGTATTTTTTTCTCTTTCTTTTTTATATTTTTAAATTATGAAAGTATGATAACACATTTACAGGAGAGAGTTAGAGAATACAAAGTTATTTGTATAGTTATAGTTCCACTGCATATGACAATTATTTTTTAAGTAGGTAAATGAAGATTTTTAGAGTTGCAATATCAAACTCTCAAAAACTAACAGAATGTACAGAAATGTAGAAGGATAGAGTAGACCTGAAAAGTACTATGAACCAATTCAACATAATTAAGATTTATACAATTTTCACACAATAGTAGGATACAACAAATTCTATTCAAGTTCCCATAGACTGTAAACTAGGAGACACTGGACCATACCCAGGGATATAAGACAAGTTCCATTCCAAGAGGGAGAGTTGCTGAGAATATCTGAATAAAAGACCGACATGATCTTACTTGTATTTTAGATAGATAACACTGACAGCAGTGTGTACTGCAAATTAAAAAGGGAAGAACAGTTAGGAGGTTATTATAATATTATAGCTCACATGGGATGATGAAGGCCAGGTTTTGAGCCACAGCATAAGACTGGAAAGGAATGAATAGGTATGGGAGGCACAGTTGGAGTAAATGGAGAAGATCTGGAGACTAATGGAGAGAATGAATGGATGAGAAGTCCAGATGAACCACTGAATTCAGTTGCTACTGAAACCATTAAATGAAATTGAAAATATCAGACAAAGTGCAGGTAAGTAGGGTGGCAATCATAAATCTGATTTTGAAATGTTGAATTTTGAGGTACAGATATATCCTCTAGACTACTATGCAGTTGGGATTGTGGCTCAGGATGGCAGTCAGAGGAAATATACTGTGATATTCCCACAGTCATATTTGCTTCATGTGATCCTACCATTTGCAAAAGATCATATCTTGAATTTTGTGGACAGAACATACACATGTTTCTGTGGAAACACAGTCAATGCTTTGAAAAACTTTCTCTGGATGTGTATATAAAAATCGAATACATACTGTACATACAATGATCAACAAGACTTCTAAAAGACTGTTATACTCATCTAAAAATACTGACCATACATATATATATTCATCACTTTTCAAAATGAATTTGCCCACTTAAAATAGTCAACCCTTCCCATACATTTAATTAAGTCATAGAATTGAGGATGGCAATAAAGCCTTTGGAGGTATCACTTATATGAACAGTTTGTTAAATTCTGAGAAAATGTGCTTTGTCCAACTTATTTTATATACTTGGCCCAATTTTTCCATCATATATTTACATTTATATATATGTAACTGACCTAATTTGTATAATTGATGTAGCTCATTCAAACAATACGGGGAGTCCTCATGGCACTCAATACCATCCTTTATCTCCATTAACTCATAATCCTTACAATGATATATATCCCCCCATTCTTCGGATAGTTAATGGAGGCAAGAAAAGATGATGTAATTTGTCCAGCTGGTGAATGGTGAAGCCAAAATTCAAACCCTAGAAGACTGACTCCAGAGCCTATATACTCTTAAACCCCTCACTAAGCTGCCAGTAAGTAAAAGAATTCAAACTAGGATTTAGTGCTTTCCTTCTTCAGGGCAGGACTTCCCTCATAGCTCAGTCAGTAAAGAATCTGCCTGCAATGCGGGAGACCCAGGTTAGATTCTTGGGTCGGGAAGATCCTCTAGAGAAGGAAATGGCAAACCACTCCAGTATACTCGCCTGGAGAATCCCATGGACAGAGGAGCCTAGCAGGCTACAGTCCATGGGATCGCAAGAATCACACACAAACTCAGTCCGACACAAACATCCAGCACGCAGGGCAGAGGTGGAGGTGGGGTCATCGACCACCCAGCCTGGGAAGTGTTTCATTTCTCTCTTGGCCTATTAGCCTGCTGCTGCTGCTGCTGCTGCTGTGTTGCTTCAGTCGTGTCCGACTCTAAATGATGCTAATCTTTATTGCCAAGATGTGACCTATCTGCACAGAAAGAATGATAATTACCCAGGCAGGAAGGCCCCTCCAAGCTAAGGATTCCTAAGTCACCATTAAGAGTGTAATGATATTAGATCATCACTTGCAGAGGGAGTTTGTAGGTTAATTGCTATTTCATAAAGAGGTGTTTAGAGACCAGATTACCATATCATTATAATGCCCACCTAAAATCTTGACTATTCAGGTGTGTATTCACCCCACATCATATACTGAGCTTCAATGTGTACAAATAAAAGCAATAATAAAAAAAATATATTATAGAAAATAGTTGAGGAAATGAATGACCACTTTTATCATTCATCAAACAGTGCCTCTTTTAAGAAAATATACAGGTCACAAGAATAATCTGATCTGTCTCCTTCAGTTTCATAATTATGTGAAATTTGAGTATGCTTAGTTTATCCAATTTTACCTTGTAGAAATTAATTTTGCTATTAGATTTTCCATAAGCATTAAAGATACTGCATTTCTTTGTAATGTTTCCAACAATTGCCCTGTCAAGTCATTTCCAAGTGATTCAAATATCCTGATATTTTGTTTTCCTTCATACTAG
Seq C2 exon
TGGCTCTCCTCCTGCTGCTGACCTGTGACTGTGGGGCAGGTCCTATTGGGGGAGTGACCGGTGGATTTGTCCCGGTGCCGGATGGTTCAGAAGGAACAATTCACCCGTGGGGAATTGAAGGAGCCCAACCTGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039483:ENSBTAT00000002538:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]