MmuINT0053487 @ mm10
Intron Retention
Gene
ENSMUSG00000056632 | Dsg3
Description
desmoglein 3 [Source:MGI Symbol;Acc:MGI:99499]
Coordinates
chr18:20533375-20536967:+
Coord C1 exon
chr18:20533375-20533629
Coord A exon
chr18:20533630-20536824
Coord C2 exon
chr18:20536825-20536967
Length
3195 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
ATGTCCTTGTTCCTGACCAGTGG
3' ss Score
7.05
Exon sequences
Seq C1 exon
CTACATCAGCTCTTCTACAAGCCCAGCAGCAAGTGTCTCCAGGAGTGTACAATGTCCCAGTCATCGTGAAGGACAATCAGGATGGGCTGTGTGACACACCAGAGAGCTTGACCCTGACAGTGTGTCAATGTGATGACCGGAGCATGTGCAGAGCCCCTATCCCGAGCAGAGAGCCTAACACATATGGGGAGTCATCCTGGAGGCTGGGGCCTGCTGCCATTGGCTTGATCCTGCTAGGACTCCTGATGTTGCTAT
Seq A exon
GTGAGTAAGCAGACGTGTTCTTCAGGGTCCATGGCAGTGATGTCATTTACAAAAGCCACTGTGCTCATCTGTACAATGTGAGAAGTGTCATTCTCTAAGCCGATGACGAGCAAAGCTGAGGGAAATTGCAGGAAGATTCTGAAATGTTTAGCCTGTCATTTAGTAACAATTTAAATATAACAAAATGGGTCATATATGCAAATATTTTGAAAAAACAGGGTTGGGGGACTAGCTCAGTCAGTAAAGCATTTTCTCCACAAGCTGAGAACCTGAGTCCAGTCTCCAATAGGCACCTGAAAAGCCAGGTGCAATGGAGAATGCTTGTATACCAGCCATAGCAAGACTTGGGAGGCAGAGATAAGCTAATGCCTAGAGCTCACTGGCCAGCTAGCCTAGTCTACTTGGCAAAGCTCTGGGCATTGAGAGCGCCTCCCAAACAAAAAGTGGACAACACTAAGGGATGATACTCGTGGCTGCCCTCTGGTCTTCATCCAGGTGTGTGCTCATAATTACATTCCACACATATGAGGGAGGGTGGACATGAGAGAGAGAAATTATAAAGCTATTCTACATTCAGTCAATAATGTTCATACTTAAAGCTGTGCCTTTATGCATAAACGTGGGCTTTCTAAAATGAACATAAATATCTCAAATGCATATGCAAATCTTGTGAAGCCCTAATATAAAAGGATGCTGGTCAAATAACATTAGAGAGGGCCTGCATTAGGATCCACATCCAGGATGCACATTAATAGAACTTCAGGTCTGAGGTTCTATTGTTTAATCCAACAAGTCCTCAAAACAGAGTTTACCCCTCGTGTGCATCCCTCTAAAATGCCCACACCTGGGCTGCAGAGATGATGCAGTAGTTAGGAGCACTTGTTTCTCTAGCAGAGGACCCAGGTTCAATTCCCAGCACCCTCGTGGAGGCTCACAATCACCCATAACTTCAAGACTCACATGCTGTACTTATTCATACATATAAAAGTACTTTTTAAAAGCATTTTAATGTTCACACATAATAGTGAAGACATTTAGGGAAATTACATGTCTGTACTACCTTTTAATAAACATGCATTTTATTTTATTCAATAGATAGACTTCTGGAAATTTTCATTTTCGTCAATATTTTGTTAATCAAATGGTTCTCTGAATGTGAGAGTCCTCTACCCTCTATTTAAGGGAACTTTGAAAGGAGTTGCACAAATAAGTGATCCTTAACAAATTCACAATAATTCCCTAGTTCACTACTGAATCATAAAATATTAACGATAAAACAAATTCCCATGATAGCATATTATACTTCCACTGTCTTTAGAAATGTCATTTAGGGGGTAGAAGGATGGCTCAGTTATTATGAGCATATAGCTCTTGCAGAAAACCTGAGTTCAGTTCCCAGCACATATTTTGAATGGCCAATAACTCCCTATAAACACAGCTTCAGGGGATCCAATGCCTTCTTCTTCTTGCCTTCAGAGACATGTGCAATCAGATATGCATACCTACACAGAGACACACAATTAAAAATAAAACATTTTAAGGATAAATATGAATAAATACAATTTTTATAAGCCCTGTATTAAATTTCAAGATCAATTACATTCCATCTATTTTATAACTTGACCTAATTATATAGTAATCTAGGACTGATCCAATTTGCATAATTATGTAGTTCATTCTACCAATGCTAGCAGGTCTTCATAGCATCCATCACTGTCTTTTCCATCTATCAGACAACCATGATGGACGCACCATTTATTTCCTTTTTGAGCTGATGAGTTAGCTGAGCAAAGAAAGATCACATAAAGCATTTGGGGTTCCAGAGCTGGAGTGCAGTGCATCCAAAGCTCAAACCCTAGAAGTCTAATTTAGAGACTGTGTTCCCTAAAACCCTTCAGTAAACTACTTGACTTGTAAGTGGGCAGGTCAAGCATAGGGTTCATGTGGCCTTGACAGGGCAGAGAAGGTGAGCCATTGACATCAGAGAATAATAAACACCTGCTTTCAATAATTAGTATTTCTGGAGCTGGCGAGATGGATCAACAGCTCAGAGCCCTGGCTGCTTTTCCAGAGGACCTGGATTTGAATCACTGTACTCACATGGTAGTTTTGGGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGGTTTTTTTTTGTTTGTTTGTTTGTTTTTTTAGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCATGCCCGGCTCACATGGTAGTTAACAACTGCCAGTAACTCTATCCAATTCTGGGGAATCTGACACCTTCTCCTGGCCTTTGCATGCACAAGTCATACACATGGTAGGTAGAGATAGATGCAGGCAAAACACCCATGCATATGAAACAAATATTTTCAGATGAATGTTTCTTAGCCCATTAGCAGAGTGATGCAATGACTGAAAGATCTTCTAAGCTAGGGACTCTCACTTCACAATTAAAAGTGCACTGATAAGGCCTCTGAGCTTAAGAGCACAGACTCTGCAGACAACCCAAGTTCCAGTTCTTAACACCTCGCACCCCCAATCCTCACATGCATCACACACACACACACACACACACACACACACACACACATATATTCAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGGACACTGACAGCCATTGACTAAACCATCGCTAGTTGCTCTTGTACTTTGTTGGTCAATTACCATTTACTAAGAAATTACTAAAGACCAGATTGCTGAAGTGCTGTCACAATCACCTAAAATCTTGGCTAAGGAGGTATCTCACTTGTGTGTGTATTTATGGGAACAATACATACACTCAGTATATATAAATACAACAGCAATTATAGTAATAATAATTTTTAATATGTATTATGGAAAAGGATTAAGATCCTCCAATAAATGCCCCTGCCTCCTCCTTTAGCTCATGATCATTGGAAAATTACTGTGTTTCACTTACTAAATTGTATGCTGTAGACACCAATTTTGCTTCCATTAAATATATTCCTTTAATGTTTAAACTATTGTGTTGCCTTTGTAACATTTTGGCAATTGCCATGTCAAATAGTTTCCAATGAATTTAACCATTCTCCATGTCCTTGTTCCTGACCAG
Seq C2 exon
TGGCCCCACTTCTGCTTCTGACCTGTGACTGTGGGTCAGGTCCCATTGGAGGAGCAGCGACAGGTGGCTTTATCCCAGTGCCCGATGGTTCGGAAGGTACAATTCATCAGTGGGGAATCGAAGGAGCTCAGCCCGAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056632:ENSMUST00000070892:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types