MmuINT0053485 @ mm10
Intron Retention
Gene
ENSMUSG00000056632 | Dsg3
Description
desmoglein 3 [Source:MGI Symbol;Acc:MGI:99499]
Coordinates
chr18:20528951-20531585:+
Coord C1 exon
chr18:20528951-20529090
Coord A exon
chr18:20529091-20531357
Coord C2 exon
chr18:20531358-20531585
Length
2267 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CTCAATTATTATTCATACAGAAA
3' ss Score
4.13
Exon sequences
Seq C1 exon
ATATGTCCTGGGTCGTAATGATGGTGGTTTGCTTGTTATTGATTCAAAGACTGCTCAGATCAAATTTGTCAAAAACATCGACCGAGATTCTACTTTCATAGTTAACAAGACAATTTCTGCTGAGGTTCTGGCCATAGACG
Seq A exon
GTAAGAAATATATTTCAATGGTTTTGAATGAAATCTTACTTCAAATAGCATTTCTTCCACAGTAGATGGTCATGACAGTTTTATATAATTATATATTTCCTTTGTCACTAATGATCATTATCAAGGCTTTGGGCCTTGAGTCTGAGATACCATACCTAAGAGAAACTAAGAATTTCCACTTTTCAGCTAAGTTGGTAGAACCCATAAACCTTTGGTTCACTATGGGTGAGGAAGAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTATGCATATTTATCTATATATGTATGGGTATGCATACATTTGTAGAGACCAGAGGAAGATGTTGAGTGTTTCATCAGTGTGTGCCTTAGTCACTTCAGACAGGCTATCTTATGTAACCTAGAGCAATGTGGGCAGCCAGCAGGCCCTAGAGACAGAGCTACAGATGATCACACAGCAGCCACAGCCACAGTGCTAAGGATCCAAACCTGTACCCTCATGCTCGGACGTCAAGTGTTCTCATCCACTGAGCCACATCTCTACTTTTTTGATTCACAAAAATACATGAGTTTTAGAGGACCAGTAAAAATTCCTATAAACATCAACAAATGCCCCTGCAGATGCAAGCTTGCTTTGTGGGTTTTCTATATAAAGCCTGCATACTCATACCATTGCACAATAGCATTTTCTCTCCTGAGATGTTTTAAAATAATATTCATGGAATGTATATGTTTCTCCATCTATAAAATTAATTTGCCAGTCAGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAAAGAGTGAGTTCCAGGACAGCCAGGGGAACATAGAGAAACCCTCTCTCGAAAAAAGAAAAAAAAAGTTAATTTAGGCTCAGCATAGTAAACACCAAGAAATAAGCATCATAGATATTAACATTTGGGGAAACTTTCCTAACTCTGAAGATAATAGAACTTACCATCTACTCACTGGGAGAGTTTTATTTTGTTGTTTACTGTTAAAATTTTCAGATTTTCTCCTCTAAACTGTTTTTCTGTTTTTTGGGGTTTTGGTTTTGGTTTTTGGTTTTTTGGTTGGTTGGTTGGTTGGTTGGTTGGGTTTTTTTGGGTTTTTTGGGTTTTTTTTTTTTTTGGTTTGTTTTTTTTGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGTTATCACTTAATAAACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCAAGTGCTGGGATTCGAGGCGTGTGCCACCACTCCCGGCTCAACTGTTTGTTTTTTGAAGTAAGTCGGAACTCACTATTGGATCTGATCCTGTGGCTCACTATGTAGACCAGGCTGGTCTCAAACTCGTAGAGATCCACCTGCCTTCTGAGTGCTGGGTTTAAAAAGCCAAGTGCCATCACACCCAGCTCCAGTAAGCTTTTAAGTCTTAAGCAATAAATATAATTACTTATTCCAAATACTTGGGCTCAAGTTGTAGGAGCAAGAATCTTTTGTCTCCTGATAAGAGATATAGCCACAGCCTTAGAAGTTATTATTTTTGTAATGATTTCATTTGTAATCTGTGAATTCTTTACTTTGATTTCAATAATATTTGACTAATACTAATGCTGCTTGCTAGAGACACCAGGCAACTTGGCAAGTTTAAGTTGTTTTATTAGTTACAGAAGTAGGATGATGTCCTTTTACTCCTGAGAATAAAAATACAATTTTTTTATAAGAAGTTATCCTAACTTGGAAGTAAAAAAGAAGTACAGAACATTCCTTTTTTTTTTTTTCCGTTGGATGCAGTGACGCACCTACTCTTCCAGCTACTCAGGAGGCTGGGTCAGGAGTCCACAGCCAGCCTGAGAAACCTAGAGCAGCTCTTCATCAGAGAGAAATGGGGGGAGGGAAAGAGAGAAAGAGAAGAAAAGAAGGGAGGGAGGGAAAGAGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAAGAAAGAGGGGAGGGAAGAAAGAGGGGAGGGAAGAAAGAGGGGAGGGAGGAAAACAGATAAAGAAAAGAAGCTGAAGAGACAGAAAGACAAGAGAAGATCTGAGCAGGGGGAGGGAGTCAGAGAGAGCAAAAGGAAAGCGATTTTCTGTGCTTTGCTCTTTGTATTCTTTAACACTCAATTATTATTCATACAG
Seq C2 exon
AAAACACTGGTAAGACCTCCACAGGCACAATATATGTGGAAGTGCCCAGTTTTAATGAAAACTGCCCGTCAGTTGTCCTCGAGAAGAAAGACATCTGTACTTCCTCACCTTCTGTGACCCTCTCAGTGAGAACCCTGGACAGGGGTAAATACACTGGCCCCTACACAGTGTCCCTGGAGGAGCAGCCACTGAAGCTGCCAGTCATGTGGACCATCACGACGCTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056632:ENSMUST00000070892:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(50.5=100)
A:
NA
C2:
PF0002812=Cadherin=PD(16.1=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types