RnoINT0051411 @ rn6
Intron Retention
Gene
ENSRNOG00000016632 | Dsg3
Description
desmoglein 3 [Source:RGD Symbol;Acc:1592103]
Coordinates
chr18:15663762-15666576:-
Coord C1 exon
chr18:15666437-15666576
Coord A exon
chr18:15663990-15666436
Coord C2 exon
chr18:15663762-15663989
Length
2447 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CTCAATTATTATTCTTACAGAAA
3' ss Score
6.33
Exon sequences
Seq C1 exon
ATATGTCCTGGGTCGTAATGATGGTGGTTTTCTTGTTATTGATTCAAAAACTGCTGAGATCAAATTTGTAAAAAACATCAACCGAGATTCCACTTTCATAGTTAACAAGACAATCTCTGCTGAGGTTCTGGCCATAGACG
Seq A exon
GTAAGAAAGATATTTCCATGGTTTTGAGTGAATTATTATTTCAAATAGCATTTCTTCCACAGTAGATGGTCATGACTGTTTTATATATTTCCTTTATTACTAAAGATCATTATCTAGGGGCTTTGGACCTTGAATCTGAGATACCATACCGGAACCTAAGAATTTCCACTTCTCCGCTTAGTTGGTAGTGCCCATAACCCTTGTCCCTTTGGTTCACTATGGGTGTGGGAGAAAGTGCGTGCATATGTGTGTGTGTATGTGTGTGTGCATGTGTGTGTGCATGTGTGTGAGTGTGCATGTGTATGTGCATGTGTGTACATGTGTTGTGTGTGCATGTGTTATGTATGTGTATGTGTGTATGTGGGCATGCATGTGTGTGCATGCATGTGCATGTGCATGTGTGTGTACATGTGTTGTGTGTGCATGTGTGTGTGCATGTGGTGTGCGTGTGTTGCATGTGGTGTGCATGTGTGTGTGCATGTGTGTGAGTGTCCATGTGTGTGTGCATGTGTGTGAGTGTCCATGTGTGTGTGCATGTGTGTGTGTGTGAGTGTGTGTTCATCTATATGTGTATGGGGGTGCATATGCCAATGTATTTGTAGAGGCCAGAGAAAACAGAATGTGTCCTTTGTATGACTATCCAGACATCATCAATCCTTTTTGGGTTGTGAAGTAGAACTTAAAGAAGTCATAACTTGTGATGACCAGGCTTGAGCCTTGATTCTGTTATGTCTGAGTTGAACATTGTAAAACATCACCTCCCCCTCCCCCATATGAATGCCCCCATCCACCCCCTTACCACCCCCTCCCCCAACGTTTTCCTGCACTGGGGGTCCAACTGTGACAGGACCAAGGGCTTCCCCTTCCACTGGTGCCCCAACAAGGATATTCTCTGCTACATATGCAGCTGGAGCCATGGGTCAGCCCATGTATATATAGTCAGTTCTTTCAATCCTTTCTCTAATTCCCCCAAAGGGGGTCCTGTTCTCAGTTCAGTGGTTTGCTGCTAGCATTGACCTCTGTATTGGACATGCTCTAGATATGTCTCTCAGGAGAGATCTATATCCAGTCCCGTTCAGCATGCATTTTTTAGCTTCATCAATCTTATCTAGTTTTGGTGGAGATATATATATATATGGGCCACATGTGGTCAGGCTCTAAATGGCCATTCCTTCAGTCTCTGCTCTAAACTTAGCTTCCATATCCCCTCCTATGGATATTTTGTTCCCCCTTTTAAGAAGGAGTGGGAGCATCTGCATTTTGGTCATCCTTCTTGAGCTTCCTGTGGTCTGTGGACTGTAGCTTGAGTAATTCAAGCTTTTGGGCTAATATCCACTTATCAATGAATGCATACCCTGTGTGTTTTTCTGTAATTGGGTTACCTCTCTCAGGATGATATTTTCTAGTTCCATCCATTTGCCTATGAATTTCATAAAGTCATTGTTTTTGATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGCAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTGCTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCTTTGTTGTATGTTGGAGCATCTTTTGGGTGTATGCCCAGGAGAGGTCTTAAGTAACAAATAAAATTACTTGAGTCCAAATACTTGGGCTCAAGTTGCAGGAGCAAGAATCTGTCCTCTCCTGATTACAGATATAGCCACAGCTTTACAGGCTATTGTTTTCATAACGATTTCATTTGTAATCAGTGAATTCATTATTCTGACTTTAAGAATATTTGACTAATACTAATGCTGATTGCTAGAGACAATAGGCAATTTGGCAAGTTTAAATTGGTTTTATTAGTTATGGAAGTAGGATGATGTCTTTTTACTCCTGAGAATAAAAATATAATTTTTCATGAGAAGTTATCCTATCTTGAAAGCAAAAAAAGAAATACAAAACATTCCATTTTTATAAGTTGGATGCAGTGGCACATCTACTCTTCCAGCTACTCAGGAGGCTGGGGCAGTTCAAAGCCAGCCTGAGAAACTTAGAGCAACTCTTCATCAAAGAGAGAGAGGGGCTGGAGAGATGGCTCAGCTATTAAAGGCTAGGCTCACAACCAGAGAGAGAAGGAGCGGGAGGAAGAGAGGGAGGGGAAGAGGAGAGGGAGAGGGGGAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTCAGGGAGGGAAGGAAGGTGGGAAGGAGGGAGGAAGGGAAGGAGGTTGGAGGAAGGGAAGAAATCAGAAAAAGAAAGGAAGCTGAAGAGACAGACAAGAGAAGGGGAGCTGAGAGATAAGGAAGAAGGCAGAGGGAGGGAGTCAGAGAGCAAACGGAAGGCGATTTTCTGTGCTTTACTCCTTGTAATTCTTTAATGCTCAATTATTATTCTTACAG
Seq C2 exon
AAAACACTGGTAAGACCTCCACAGGCACAGTATATGTGGAAGTGCCCAGTTTTAATGAAAACTGTCCATCAGTTGTCCTGGAGAAGAGAGAGATCTGTACATCCTCACCATCGGTGACCCTCTCAGTGAGAACCCTGGACAGGGCTAAATACACTGGCCCCTACACAGTGTCTCTGGAGGAGCAGCCACTGAAGCTGCCGGTTGTGTGGACCATCACGACGCTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016632:ENSRNOT00000022584:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
NA
C2:
PF0002812=Cadherin=PD(16.5=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]