MmuINT0055814 @ mm9
Intron Retention
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26444850-26446015:+
Coord C1 exon
chr2:26444850-26444966
Coord A exon
chr2:26444967-26445899
Coord C2 exon
chr2:26445900-26446015
Length
933 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACTACCCTTACTCACCACAGAAC
3' ss Score
6.74
Exon sequences
Seq C1 exon
CCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGTTCCATCTCGGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCACTTGCGACGGACACAGAGCCTGCAGCACCTACCG
Seq A exon
GTGAGTGCTCACTCCGCATCCCACCATTCCCAACCAGTAACAAGTCCTGGGACCCAAGAGCCTGTTCACCCTGACTAGGGAGCTGAGGCCAAAGCACTGAGGCATCCTTGACATCAGGGATCAAGGTGGCCTCTCAGGTTTGGAGGCTGGTACCCAAGAATGCTGTGAAATCACACCCAGGATTGCCCTGACATAATATCGCCTCAAAGGGCGTATTCCAGATGGATAGGGGCTTCTCAGCACGTCTGCACCCCTCCTCGGTGTTTACTCCTTCCCATCTGTGATGGCTACAAAGTCCTTCATAGGGACAGTGCTTACCTCCCCCAAATCCTTGTCAACCCCTCTCTCCATAATGGCCCTAGGCAGATGCCCATGTGGATCTTCTGATGTCTCCTCAGGCTAACAGGATAGTCTGAGCAGCACATGGCCTCAGGACACAGCCAGAAGGGCAGGCTCTGATGTGGGGAGTTCAGACTCCTCCCTGCCTATAGAGTACCCCAAAAAGGCCTAGGTGCATGAATTCTCTCCCAGGCTCAAAATGCCAGATTTCAGAGGCTCCTGAGCCTCCAAAGTTCAGGAAATGCTAGAGTCAAGAGAGCAGCTTAAGCACCAGGGGCCCAGAGTCCAGGCAAGGAAAGCAAGCCAGGCTCCGGCCAGCTCTGAAGTGGCCACTGCAGGAAGGGGCCGGCTCTGCTGTACTCTCTGGGTCTGTGTGTCATAGGCCAAGTCATAGGAAACTTGGTGGATCAAGTGGCACACACAGGCTTGTATGCTGACCCACACGAGCTGGGACTTGGGAAGGGAACCTCTGAGCCCAGGGAGTGATGCTGGTCAGGTAGCCACAAACAAGTGATATGGGCATCCTTTCTGAGGAAGGTTTGACTAGGGTCACTCCATGTTGGGACCCCTCTGAACTACCCTTACTCACCACAG
Seq C2 exon
AACCATCTACCGGACTGCCTATCGCCGTAGCCCTGGGGTGACTCCCGCAAGGCCTCGCTATGCTTGCTGCCCTGGTTGGAAGAGGACCAGTGGGCTCCCTGGGGCTTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-Egfl7:NM_198724:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0249512=7kD_coat=PD(35.0=73.7)
A:
NA
C2:
PF075468=EMI=PD(42.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTAGAGTGTGTACTGTGGG
R:
CTCCACAAGCCCCAGGGAG
Band lengths:
230-1163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: