RnoINT0053391 @ rn6
Intron Retention
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4040375-4041583:+
Coord C1 exon
chr3:4040375-4040491
Coord A exon
chr3:4040492-4041455
Coord C2 exon
chr3:4041456-4041583
Length
964 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACTATACTTACGCACCACAGAAC
3' ss Score
3.86
Exon sequences
Seq C1 exon
CCGTAGAGTGTGTACCGTGGGGGTTTCCGGAGGCTCCATCTCAGAGACCTTTGTGCAGCGTGTATACCAGCCTTACCTCACCACTTGTGATGGACACAGAGCCTGTAGCACCTACCG
Seq A exon
GTGAGTGCCTACTCCTTATACCGCCATTTCCAAACGGGAATAATCTCTGGGGCCCAGAGCCTGCCTCACCCTGAGCTGGGGACCTGAGGCCAGAGCAGCGAGGCATCCTTGAGATCAGGGATCAAGGTGGCCTCTCAGTTTTGGAGGCCGGTACCCAAGGATGTGTAATCCACCCAGGATTGCCCTGAGAGGATGTCACCTCCAAGGGCACATCCCATATGGACAGGCTTTTCTCAGCACACTTTCCCCTCCACTTTCAGTGGTTACTTCTTCCTTCCCACAGTGACAGCTACAAAGTCTGTATTCACAGGGACAGTGCTTACCCTCCCCAAGTCCTTGTCATCCTGATCCTATTCTGGAGCCCCATCAGGAACCCCACTCCCCATAATGGTCCTAGGCAGATCCCATTCGGACCTTCAGGTGTCTCATCGGGCTAACAGGACATTCCGGGCACTCCCTTGGCCTCAGGACACAGCCAAGTCCTTGTTCTGATGTGGGGAGTTCAGTCTCCTCCCTGCCTACAAAGTACCTGAAAAAGGCCTAGGTGCATGAGCTCCCTCCCAGGCTCAAAATGCCAGATTTCAGAGGCTCCTGAACCCCCAAAGTTAGAGGAGTGCTAGAGTCAAGAGAGCAGCTTAAGCACCAAGGGCCCAGAGTCCAGAGAAGGAAAGCCAGGCTCCAGCCGGCTCTGAAGTGACCATTGTAAGGGGGGGGGGCAGCCCTGCTGTACTTCCTGGGTCTGTGTGTCGTAGGCCAAGTCATAGGAAACTTGATGGATCAAGTGGCACACAGAGGCCTGGTGAGCCAAGTGAGCTGGGGAAAGGAACCTCTGAGCCCCTGGGAGTAGTGATGCTGGCCAGGTATCCTCAAACAGATGATATAGGCAGGGTGCATGCTTTCCAAGGAAGGCTTGGCTAGGGTCACTCCACATTGGACTTCTCTGAACTATACTTACGCACCACAG
Seq C2 exon
AACCATCTACCGGACTGCCTACCGGATTGCCTATCGCCATAGCCCGGGGCTGACTCCCAGCAGGCCTCGCTATGCCTGCTGCCCTGGTTGGAAGAGGACCAACGGGCTCCCTGGAGCTTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388:ENSRNOT00000026318:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(52.7=97.5)
A:
NA
C2:
PF075468=EMI=PD(45.9=77.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGTGTGTACCGTGGGGG
R:
CTCCACAAGCTCCAGGGAG
Band lengths:
240-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]