MmuINT0055815 @ mm9
Intron Retention
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26445900-26446272:+
Coord C1 exon
chr2:26445900-26446015
Coord A exon
chr2:26446016-26446176
Coord C2 exon
chr2:26446177-26446272
Length
161 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAGGTCTCTTCTACCCACAGCAA
3' ss Score
7.7
Exon sequences
Seq C1 exon
AACCATCTACCGGACTGCCTATCGCCGTAGCCCTGGGGTGACTCCCGCAAGGCCTCGCTATGCTTGCTGCCCTGGTTGGAAGAGGACCAGTGGGCTCCCTGGGGCTTGTGGAGCAG
Seq A exon
GTGAGGGCAGTGTGCACTGTGCCTGATGTGAGGGACTCCACTGCCCATCATTGCCCCTACTGCCTTTTATTCCTCAAGCAGGGCAACCCTGCCCTGGCTGCTGCGGCGCTCTGGGGAGTCTCTTGAGTCTGGATGCTCAGACAGGTCTCTTCTACCCACAG
Seq C2 exon
CAATATGCCAGCCTCCATGTGGGAATGGAGGGAGTTGCATCCGCCCAGGACACTGCCGCTGCCCTGTGGGATGGCAGGGAGATACTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-Egfl7:NM_198724:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(42.9=75.0)
A:
NA
C2:
PF079748=EGF_2=WD(100=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATCTACCGGACTGCCTA
R:
GTCTGGCAAGTATCTCCCTGC
Band lengths:
210-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: