RnoINT0053392 @ rn6
Intron Retention
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4041456-4041858:+
Coord C1 exon
chr3:4041456-4041583
Coord A exon
chr3:4041584-4041762
Coord C2 exon
chr3:4041763-4041858
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAGGCCTCTCCTACCCACAGCAA
3' ss Score
7.29
Exon sequences
Seq C1 exon
AACCATCTACCGGACTGCCTACCGGATTGCCTATCGCCATAGCCCGGGGCTGACTCCCAGCAGGCCTCGCTATGCCTGCTGCCCTGGTTGGAAGAGGACCAACGGGCTCCCTGGAGCTTGTGGAGCAG
Seq A exon
GTAAGGGGCAGTGTGCACTGTGCCTGATATGAACTTCACTTCCCACTGCCCAGCAGTATCCCTGCTGCCTTCTACCCCTCAAGCCATGCATCCTTGCTGCAGGGCAACCCTTCCCTGGATGCCGCAGGGTTCTGGGAACTCCCCTGAATGGGTGACAGACAGGCCTCTCCTACCCACAG
Seq C2 exon
CAATATGCCAGCCACCGTGTGGGAATGAAGGGAGTTGCATCCGCCCAGGCCGCTGCCGCTGCCCTGTGGGATGGCAGGGAGATACTTGCCAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388:ENSRNOT00000026318:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(45.9=77.3)
A:
NA
C2:
PF079748=EGF_2=WD(100=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTACCGGACTGCCTAC
R:
TGGCAAGTATCTCCCTGCCAT
Band lengths:
218-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]