GgaINT0123948 @ galGal4
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7750051-7750950:-
Coord C1 exon
chr17:7750838-7750950
Coord A exon
chr17:7750147-7750837
Coord C2 exon
chr17:7750051-7750146
Length
691 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTGCTTGTTTGCTCTCACAGCTC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GACCATCTACAAGGTTGCCTACCGGCAGGTGTACAAACAGGTACCCCAGCCTGTGGCCTCGTGCTGTCCTGGCTGGAGCAGAACCAGCAGCTACGAGCTCAGCTGCAACACAG
Seq A exon
GTAATGAGGCCACTGGGCCACCCCGGGACCCTGCTCACCTTGCTGTCCCCCAGTCCCTTGATTCTGGGTGGGTGACGTCCCAGTAGCCAGCTCTCTAGTTGACCAGCACCAGTCTGATTCTTCCATCTACATTTTCAGCATCCAGTAGCACAACCAAATGTGGCTCAATTTCTTATTAATTTCTAGGCTTTCTTGGCTGCCTCAGGCCTTTTTCCTGTGGGATTGCTTATTAACTTTAGAGTTACCAGAGAATAAATAAAGTGAGCAAGTTCTTTCCATATAAATCAGCAGTAATGGAAGAGAAATGCTTTCAGGAGGACACTGTGATGTGCAACATAAAGCAAATGCAGAACACGTTAGCACATCAGCAGCTAATCTGCCTCCAGAAAAGCTTGTAGAGCAACACCAGATGCTCTCCTGAGCTGTCAGGGTGCAGTGTGGCCCTCCTTCCCCTGATCTGTGCTGGTTGCAGGCCCCTCGGCCTCCTTCCAAACCAAGGCTTGTTTGTCCCACTCCTGCTGCTCCCAGCACATCCTCAGCACAGCTCAGCCCCACCAGGATGGAGCAGCCCATGCCCAGGGCTGGCACAAGGTTGTGCTGCCCCACGTGCGTGCACAATGCATGCTTATGTAGGCAGGGGAGGGGGATGCGCAGCCCCACCGAGTGATGCTGTGCTTGTTTGCTCTCACAG
Seq C2 exon
CTCTGTGCCAGGTGCCGTGCCAGAATGGTGGCCGCTGCTCCTTCCCTGGAAGATGTGCCTGCCCTCCCGGCTGGATGGGGCCTTCCTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(40.8=74.4),PF079748=EGF_2=PU(9.1=7.7)
A:
NA
C2:
PF079748=EGF_2=PD(87.9=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATCTACAAGGTTGCCTAC
R:
AGGAAGGCCCCATCCAGC
Band lengths:
200-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]