RnoALTA0013343-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4041456-4041858:+
Coord C1 exon
chr3:4041456-4041583
Coord A exon
chr3:4041686-4041762
Coord C2 exon
chr3:4041763-4041858
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCCATGCATCCTTGCTGCAGGGC
3' ss Score
7.44
Exon sequences
Seq C1 exon
AACCATCTACCGGACTGCCTACCGGATTGCCTATCGCCATAGCCCGGGGCTGACTCCCAGCAGGCCTCGCTATGCCTGCTGCCCTGGTTGGAAGAGGACCAACGGGCTCCCTGGAGCTTGTGGAGCAG
Seq A exon
GGCAACCCTTCCCTGGATGCCGCAGGGTTCTGGGAACTCCCCTGAATGGGTGACAGACAGGCCTCTCCTACCCACAG
Seq C2 exon
CAATATGCCAGCCACCGTGTGGGAATGAAGGGAGTTGCATCCGCCCAGGCCGCTGCCGCTGCCCTGTGGGATGGCAGGGAGATACTTGCCAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388-14-11,14-10,14-9,14-8-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(45.9=77.3)
A:
NA
C2:
PF079748=EGF_2=WD(100=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTACCGGACTGCCTAC
R:
GCGGATGCAACTCCCTTCATT
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]