MmuINT0056006 @ mm9
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:35047923-35048423:+
Coord C1 exon
chr17:35047923-35048000
Coord A exon
chr17:35048001-35048307
Coord C2 exon
chr17:35048308-35048423
Length
307 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CCCCTCCCTCCGCACCCCAGGAC
3' ss Score
8.58
Exon sequences
Seq C1 exon
CACTGCACGTGTGTGGATGACTGCTCCAGCTCCAATTGCCTATGTGGTCAGCTCAGTATCCGATGCTGGTATGACAAG
Seq A exon
GTACGTGACCCTCACCTGGCAGGTCTGCCAAGGAGCCAGGACCCTGCTGTGTTGGGGAAGAGACACAGGGTGTGGCAGGAAGCCCTGCCAGGAATGCAATGGGCCTCTCTGCTGGAGTATATGCAAATGCGCGCTCTAGTGCCTGCGCGCACACTTCCTGGTCTCTGACCTCAGCCTGCAGACTCTGCACCTTGCTCTTCTGCTCTTGGCTGGGGTCAGAGTGGAGTTTCCTGTGGAGTCCTCTGGGTCCAGGGCAGCTGAAATGGGCCCCACAGAGAAACCACTATCCCCTCCCTCCGCACCCCAG
Seq C2 exon
GACGGGCGGCTGCTCCAGGAGTTTAACAAGATCGAGCCCCCCCTGATCTTTGAGTGTAACCAGGCATGCTCCTGCTGGAGAAGCTGCAAGAACCGCGTGGTGCAGAGCGGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-Ehmt2:NM_147151:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGTGTGTGGATGACTG
R:
TTGATGCCGCTCTGCACC
Band lengths:
192-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: