DreINT0009794 @ danRer10
Intron Retention
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1338716-1339001:-
Coord C1 exon
chr19:1338924-1339001
Coord A exon
chr19:1338832-1338923
Coord C2 exon
chr19:1338716-1338831
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
GTGTGTGTGTGTTCCCGCAGGAT
3' ss Score
12.72
Exon sequences
Seq C1 exon
CACTGCAGCTGTACAGATGACTGTTCGTCCAGTAATTGTCTATGTGGGCAGCTCAGCATCCGCTGCTGGTACGACAAG
Seq A exon
GTACAACAACACAGCTCTGTTCATCTCTATTATAACTCTATAATACATCACTGAGGGCTGTATAAAGTGTGTGTGTGTGTGTGTTCCCGCAG
Seq C2 exon
GATCATCGTCTCCTGCAGGAGTTTAATAAGATCGAGCCGCCGCTGATCTTCGAGTGTAACATGGCCTGCTCCTGCCACAAGACGTGCAAGAACCGCGTGGTGCAGGCTGGAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325:ENSDART00000168138:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGCTGTACAGATGACTG
R:
GCGGTTCTTGCACGTCTTGT
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]