RnoINT0053581 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4590021-4590528:+
Coord C1 exon
chr20:4590021-4590098
Coord A exon
chr20:4590099-4590412
Coord C2 exon
chr20:4590413-4590528
Length
314 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
CCCCTCCCTCCGCACCCCAGGAC
3' ss Score
8.58
Exon sequences
Seq C1 exon
CACTGCACGTGTGTTGACGACTGCTCCAGCTCCAACTGCCTGTGTGGCCAGCTAAGCATCCGATGCTGGTATGATAAG
Seq A exon
GTGCGTGTCCCTCACCTGGCCACTCCCACCAAGGAGCCAGGACCCTGCTCTGTTGGGGAAGAGATACAGGGTGTAGCAGGAAGTCCTGGTGCCCTGCCAGGAATGCAATGGGCCTCTCTGCTCACGTATATGCAAATGGACGCTGGTGCCCGCCTGCACACTTCCTGGTCTCTGACCTCAGCCTGCAGACTCTGCACCGTCCTCTCCTGCTCTGGGCTGGGGTCAGAGTGGAGTTTCCTGTGGAGTCCTCTGGGTCCTGGGCAGCTGAAATGGGCCCCACAGAGAAACCACTGTCCCCTCCCTCCGCACCCCAG
Seq C2 exon
GACGGGCGGCTGCTCCAGGAGTTTAACAAGATCGAGCCCCCCCTGATCTTTGAGTGTAACCAGGCATGCTCCTGCTGGAGAAGCTGCAAGAACCGCGTGGTGCAGAGCGGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGTGTGTTGACGACT
R:
TTGATGCCGCTCTGCACC
Band lengths:
192-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]