MmuINT0058883 @ mm10
Intron Retention
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119787404-119787834:-
Coord C1 exon
chr7:119787734-119787834
Coord A exon
chr7:119787486-119787733
Coord C2 exon
chr7:119787404-119787485
Length
248 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
ATCTTTTTTTATTTGATTAGCTT
3' ss Score
5.28
Exon sequences
Seq C1 exon
ACTGGGACTTGGGCGTTTGCCTAGAGTATGAGTGTAGAAGAAAGCAGCTGTTAAAACCTGTGTTCTTAAACTCTTGGATTGATCTCAGAGCAACTTACAGG
Seq A exon
GTAAGAGTCAAAGATGGGAGTATGCTCACCTGTTTCTGTTGAAAGTGGTTACACTTATTGGTGTGAATTTTATAAGTAAGGTGTTTTTCTTTTGGAATGTTCACATAAATATGTATCTTAAAATATTTGAGACAGCACAGCAGTAATAACTTCCAAATCTGATAGCACTAAAAGATATGAGAAATAACTTTGTGACCTCTGTAGTAGTCATTGTATTTTTAGAAATATATCTTTTTTTATTTGATTAG
Seq C2 exon
CTTTTTTATAAAAGAAAACCCAAAGGACTGAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929:ENSMUST00000150844:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(17.5=100)
A:
NA
C2:
PF0092919=RNase_T=FE(14.3=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGACTTGGGCGTTTG
R:
CAGAATGTTCTCGTCCTGAAAAT
Band lengths:
183-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types