RnoINT0056309 @ rn6
Intron Retention
Gene
ENSRNOG00000014673 | Eri2
Description
ERI1 exoribonuclease family member 2 [Source:RGD Symbol;Acc:1583889]
Coordinates
chr1:189543680-189544120:-
Coord C1 exon
chr1:189544020-189544120
Coord A exon
chr1:189543762-189544019
Coord C2 exon
chr1:189543680-189543761
Length
258 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCTTTATTTTATTTCATTAGCTT
3' ss Score
5.96
Exon sequences
Seq C1 exon
ACTGGGACTTGGGCGTTTGTCTAGAGTATGAGTGTAAAAGAAAGCAGCTATTGAAACCTGTGTTCTTAAATTCTTGGATCGATCTCAGAGCAACTTACAAG
Seq A exon
GTAAGGATCAAAGATGGGAGGGAGCATGTTCACTTTGTTTCTGTTGAAAGGGCTTACACTGTATCTTATTGATGTAAATTTTATAACTAAGGTGTTTTTCTTTTGGAATATTCACATAAATATGTATCTTAAAATATTTGAGACAGCACAACAGTAATAATTTCCAAACCTGATAGCACTAAAAGATATGAGAAATAACTTTGTAACCTCTGTAGTAGTCATTGTATTTTTAAAAATATCTTTATTTTATTTCATTAG
Seq C2 exon
CTTTTTTATAACAGAAAACCCAAAGGACTAAGTGGTGCCTTGCAGGAAGTGGGAATAGAATTTTCAGGACGAGAACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014673:ENSRNOT00000019747:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(17.5=100)
A:
NA
C2:
PF0092919=RNase_T=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTTGGGCGTTTGTCTAG
R:
CAGAATGTTCTCGTCCTGAAAAT
Band lengths:
180-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]