MmuINT0059525 @ mm9
Intron Retention
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:108226832-108228279:-
Coord C1 exon
chr5:108228145-108228279
Coord A exon
chr5:108226973-108228144
Coord C2 exon
chr5:108226832-108226972
Length
1172 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCAAATTTTTCTGACTTTAGAAG
3' ss Score
5.2
Exon sequences
Seq C1 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTCGTGCTGCAGCTGGAGAAGGAATTGGTTCAAGCCAGACTGAGTGAAGCCGAGTCTCAGTGTGCACTGAAGGAGATGCAGGATAAAGTGTTGGATATAGAGAAG
Seq A exon
GTAAGAGACTCCATAAGTAGTACCTGCTTCTAAATCTGAGGGAGATGTGCTAGATACTTGTTAAGTACTAATTAAAGAGTTGAATTGATGTTTTTTACACATGAGGAACTATGAGTATTAGTTATTGAATCAGCAAATAAGGAAATGTTGCTAGCTGGCATGGTGCCTCCTAGAATGCATGAGGTCCTGGGTTCACCCTGCAGCACACAAAGCCAGGTATGGGGCACACACTTCTGATGTGGAGGGAAGCTCAAGGTCAGTCTTGACTACCTGGTTAGTTGGAGGTCAGCTGGTGTGCATGAGCCCCGGTCTAAAGAGAGAGTGGATAGGCAGAAAATAAACAGAACCTTAAGGCTCCCAATTCAGAAAATCCTTTACTGTGTCAGTGGGTTCAGGGTTATTCTCTTCTCCTCTTCCATCTGATTCAGGGTATCTGGTCTTTACATTGAGGACTTGGTCCATTTGGGGTTGAGTTTTGTGCAGTGATAAATATGGATCTATTTGCATCTTTCTTTAAGCAGCCATTCAGTGATCAACGGTTTGTTGAAGATGCTCTTTTCTCCGATGTGCAATTTTGGATTATTAAAAAGCAGGCATCCATAGGTGTGCAGACTTGTATCTGGAGCTCCCCTTGGAGTCTGCTGACTCAGCTGGTTTAGTTGGTCAATGTGTCTGCTTTCTTGTCAGCACTGGGCTACTTTTCCTATTACAGCCGAGTAGTCACCTTCACCTCTAGCAGCTCGTCCGTTATGCAGTCTTGCTTCAGCTACTCCAGGACTTTTGTGTTCCCATACAAAACTGAAGATTGATTTTCCATTTCTCTGGAGAATCGTGTTGGGATTTTAATGGGAATTACATTGAATTTGTAGATTGCTCTTGGTAGGATGTCCACTTTTACTATATTAATTCTACCATTCCATGAGCATGAGAGATCATGTCATCTTCTGAGGTCTTCAGTTAAGTGTGCCAGTTCTCTTTGTTACTTTGATACAACTCCATGTTCCATATTTAAGAATATGAATAGAGATGTGTTCTATCCCCAGAATCTGCATGGTAGAAGGAGAGAGGACTAGTGCCTACAGCTTATTCTCCAGCCTCCACACATGTATACATGTAAAAAAACAGGAATACACAACTAATTTTTAAAAAATCTCAAATTTTTCTGACTTTAG
Seq C2 exon
AAGAACAACTCATTTCCTGATGAGAATAATATTGCAAGGCTTCAGGAGGAACTCATCGCTGTGAAGCTGAGGGAAGCCGAAGCCATTATGGGTTTGAAAGAACTTCGACAGCAAGTCAGAACCTTAGAAGAGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-Evi5:NM_007964:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PU(90.9=88.9)
A:
NA
C2:
PF065706=DUF1129=PD(4.5=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTCCACCTACAACGAA
R:
CTGCCAGTGCTCTTCTAAGGT
Band lengths:
270-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: