BtaINT0058300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50984562-50990414:+
Coord C1 exon
chr3:50984562-50984696
Coord A exon
chr3:50984697-50990273
Coord C2 exon
chr3:50990274-50990414
Length
5577 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCAATTCTCTCTTGCATTAGAGA
3' ss Score
4.94
Exon sequences
Seq C1 exon
CATAAATGCAGTTCCAACTACAATGAAGATTTTGTGCTACAGCTGGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCACTGAAGGAAATGCAGGATAAAGTTCTGGATATAGAAAAG
Seq A exon
GTAAGAACAACATGAAGGCTGTCATTCCCAAACTGGAGGGGACGTATGATAGATATTTAAGTGCTTATTGAGTGGTGAAATTTGGCATGGTTTTTTGCACATTAAAAATCTTACATGGTTATAAGAGAGGAAAGGAAAAAATACATGATTCCTATTTAATTTTTGTTGTTACCATACTGGTCAAAGCCCCATATTTTGGGTAAAAATAGAGATTAAAGTCCTTTTAGAGGGAAACAACCAGGATAATTTTGATATGAATGATATTTAATTATTGGAGAAAAGAAACTTAAGGAATAGAGATTAACTGTTGTCAAGATAAGTAGTACTTAACAGCCTTTAGAGTCACCCAACTATAGCTGACACAGTATCTCTCAGACTGCTGCTGCTGCTGCTAAGTCACTTCAGTCATGTCCGACTCTGTGTGACCCCATAGATGGCAGCCCCCAGGCTCCTCTGTCCACAGGATTCTCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTAAAATCCTGGGGCAATTGGGATATGAACTATAAAAGTCTACAACGTAGTAATATTACATCTTGGCCATTGACTGAATACTAACCCTTTTTTTTTAGTATATAAAATATGCTGAAAACATTCCTCTTAAGCACATTTCAGTTAATGTAATTAAACAGAAGGCAGCAATTTCCTTCTAGAAGAATTAGATTTAGCTCTGAAAAATTTGCCATATATTTGTTAAACTAATGTATGGAATACTTTTGGGTTAGTGTAGACCACAGTGTATTTTTGAATTTAAAACCTGTGCTAAACATGAGTAAAAAGAACTAAAATCATAACCACATTCATAGTTCTTTTAAAAATGAATATTACCATTTTTATCCCAACAGTATATAAATATATCACTTGCTTTTCTCCCAATTCAAGGTAAATTTTAAAAAATCCACTATGAAATTTGCATCCTCAGCACAAAATACACAAATATTCATTTTTTTTTTAGTTTTTATTTTATTTTTTAACTTTACCTGTGATGGATTCATTTTGATATTTGGCAAAACTAATACAATTATGTAAAGTTTAAAAATAAAATAAAATTACAATATTGTATTGGTTTTGCCATATATCAACATGAATCCACCACAGATATACATGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGTCGTCCCAGTGCACCAGCCCCAAGCATCCAGTATCGTGCATTGAACCTGGACTGGCAACTCGTTTCATACATGATATTATACATGTTTCAATGCCATTCTCCCAAATTATCCCACCCTCTCACTCTCCCACAGAGTCCAAAAGACTGTTCTATACATTAGTATCTCTTTTGCTGTCTCATATATGGGGTTATCATTACCATCTGTCTAAATTCCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTTATCCACATCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAATAATACTCCATTGTGTATATGTACCACAGCTTTCTGTCTTGTTTTTCTTGTAAAAGTAAATTTGTTTAAAGAAAGAAATTAACCATTGTTTTCAAATATTATAATAGTTTTATCTGCAACAGTGTAGAAATAGACTAGTTAAATAAATACGTAAGCATTTCAGGTTAATTTTCATCTGAGTATAACTGTTACAGCTTTCTAAGCTACAGAAAACCATCACAGTTTATATAGGAAGATTTTAGCTGGAGATGTACTTAAAGAAGTTAACTTACCTCTTTTGAAGGTTATTAAAGTACAGATGAGTAGTGGAAATAGAAACACTTTTAGGTTTCTCATAACCTCAGACTTGAGAGTCTGTGTTCCAAATCACAAATTCTGAATCTCTGTTTTCTCATCTATAAAATCATAGATGATTTGGGTTCTGTGTTGCATTTGTTTCTTTTACCCTTAGGTAGTATCTAGCCGTTGATTGAGAATCTCATAAACAATGGACATGAAAGAGCCTCAAATTCTTAACTGTTTCTTAATGAAATAGAACAGGGTATAACTACAGTTAATAGTGGAATAATTGTGCTAGAAATCTACTTGCTATTTTTATATTATCTTTGGAAAACTTTTTCTCCTATTTGTTGAGAAAAAAGCCAAAAAAAATTTAAAATGCCTAATGGGGAGTATTCTGGGCTCCATGATTTAGTTAAGAGTCTGGATCTTTCTCTTTTGAATATTTGGAAGAAGGAAATGTTCTTGGGTCCAATTTAAAAATAGATTTTTAAAGTAGCTTTGTTGGTATTCATGCATCCTATGGTTAATCTGGGGAGGCCTTACAAATAGCTGTGAAAAGAAGAGAGGTGAAAAGCAAAGGAGAAAAGGAAAGATATAAACATCTGAATGCAGAGTTCCAAAGAATAGCAAGAAGAGATAAGAAAGCCTTCTTCAGCAATCAATGCAAAGAAATAGAGGAAAACAACAGAATGGGAAAGACTAGGGATCTCTTCAAGAAAATCAGAGATACCAAAGGAACATTTCATGCAAAGATGGGCTCGATAAAAGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGATGGCAAGAATACACAGAAGAACTGTACAAAAAAGATCTTCACGACCCAGATAATCACGATGGTGTGATCACTGACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGACCTTAGGAAGCATCACTATGAACGAAGCTAGTGGAGGTGATGGAATTCCAGTAGAGCTATTTCAAATCCTAAAAGATGATGCTATGAAAGTGCTGCACTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCTAATCCCAAAGAAAGGCAGTGCCAAAGAAGCATTGAGCATTCTTTGGCATGCTCAAACTACCGCACAATTGCACTCATCTCACTTGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACCGTGAACTTCGTGATGTTCACGCTGGTTTTAGAAAAGGTAGAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTTCGTCAAGGCTGTATATTGTCACCCTGTTTATTTAACTTACATGCGGAGTACCTCATGAGAAACACTGGACTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAATATCAATAACCTCAGCTATGCAGATGACACCACCCTTATGGCAGTAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCCGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTACAGATAGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAGGCAGAGACATTACTTTGCCAACAAAGGTTCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCACCGAAGAACTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGAATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAAGAACAGAAGGGGATGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACATGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGGGTCGCAAAGAGTCAGACACAACTGAGCAACTGATCTGATCTCTGATGGTTAATTTCTTCATGCAAGATAGTTATTCTTAAAATACATATACAGTAAATTTCTGGATTTCAGTTGAGAAAATATTTAAAATCCATCACAAAAAATGTGTAGTTGGCAAGAATAACTTTATTCAGCCATCTCTGTGGGCTAACATGTTAATGAAATATTTCAGAGATAGAAAATTTTGTAGACTTGGAACTTAGTTTACTCAAGGAACTTTTATTAGAGCCTAATTTAGAATTCTTTGGTCATTCCTGAGAGCAGTTTAATACGGCAACCCTATATCCGAAGATGGGTCTTTCAGGACCCATCTTGTACCCTTGAAGGAAATACTTAGATTACCTTAGAACTAATTTCTTGAGTATTGATTAGTCACAGTAGTGACTAATGTACAAATATTTTATACTCCTTTTCCAAAGTGGTGTGTTGAAAAAATAAAACAAAATTTGAACTGCTCTCTTCCATAAATCCTTAAAATATAAATGATGTTCATGCTTTGTTTGAAGTCCTGATCAGAGGTTAGTATGTTTATTGCCATGTTGAAAAACATTTTTAATCTTGTTGCTCCATAATTCTGATTAGTGTTTTATTAAAACAGAATTAGATTCTCAGTGTCCTTAAAATTAAAGACAGTTCCTTCCTGGTGGGAATGTGAAACATGCAACTGCTTTTGAAAAGTTTGCCAGTTTCTTAAAAATTAAATGTAGAATTACCATATGATCTAGCATTTCTGCTCTTTCATATATACTCAGGAGAGTTAAAAACATATATCTACACAAAAACTTTTACATAAATGTCCATAGCAGCGTTACTCATAGTAACCTCAAAGTGGAAACAACTCATATTTCCATCAACTGATGAATGTATAAATAAAATGTCGTATATCTGTACATTGAAATTATTATTTGGCAATTTTAAAAAAAGATGAAATTTGAAAACATGCTGAGTGAAAGAAGCTAGTCATAAAAGGCCATAAATTGTATGATTGCATTTGTATGAAATATTCAAAATAGGCAAGATCGTAGAGACATACGTTAGTGATTGTCAGGGCCTGGGGGTGTAGAAAACATAGAGTAACTGCAAATGGGCATAGGGTTTCTTGGGGGTGATTAAAATGTACTGAAATTAGTTTGTGATGCTGGTTGCATAACCCTGTGAATACTCTTAAAAACGGCTGACTAATAAGTTTCATAGTTTGTGGATTATATCTCAATAAGATTGTATCAAATTAAGCACAATTACATATGAGATAAAATAGCTCTTGTTATTTTGCTGTATTATTGTATATGCTATATTTTATTCTTTAAATTAAAAAAAAATCCCCAATTCTCTCTTGCATTAG
Seq C2 exon
AGAAACAACTCCTTTCCTGATGAGAATAACATTGCAAGACTTCAGGAAGAACTCATTGCTGTGAAACTGAGAGAAGCAGAAGCTATTATGGGTTTGAAAGAGCTTAGACAACAAGTCAAGGATTTGGAGGAACACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363:ENSBTAT00000040289:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PU(93.2=91.1)
A:
NA
C2:
PF065706=DUF1129=PD(2.3=2.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]