MmuINT1009807 @ mm10
Intron Retention
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107797813-107799260:-
Coord C1 exon
chr5:107799126-107799260
Coord A exon
chr5:107797954-107799125
Coord C2 exon
chr5:107797813-107797953
Length
1172 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCAAATTTTTCTGACTTTAGAAG
3' ss Score
5.2
Exon sequences
Seq C1 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTCGTGCTGCAGCTGGAGAAGGAATTGGTTCAAGCCAGACTGAGTGAAGCCGAGTCTCAGTGTGCACTGAAGGAGATGCAGGATAAAGTGTTGGATATAGAGAAG
Seq A exon
GTAAGAGACTCCATAAGTAGTACCTGCTTCTAAATCTGAGGGAGATGTGCTAGATACTTGTTAAGTACTAATTAAAGAGTTGAATTGATGTTTTTTACACATGAGGAACTATGAGTATTAGTTATTGAATCAGCAAATAAGGAAATGTTGCTAGCTGGCATGGTGCCTCCTAGAATGCATGAGGTCCTGGGTTCACCCTGCAGCACACAAAGCCAGGTATGGGGCACACACTTCTGATGTGGAGGGAAGCTCAAGGTCAGTCTTGACTACCTGGTTAGTTGGAGGTCAGCTGGTGTGCATGAGCCCCGGTCTAAAGAGAGAGTGGATAGGCAGAAAATAAACAGAACCTTAAGGCTCCCAATTCAGAAAATCCTTTACTGTGTCAGTGGGTTCAGGGTTATTCTCTTCTCCTCTTCCATCTGATTCAGGGTATCTGGTCTTTACATTGAGGACTTGGTCCATTTGGGGTTGAGTTTTGTGCAGTGATAAATATGGATCTATTTGCATCTTTCTTTAAGCAGCCATTCAGTGATCAACGGTTTGTTGAAGATGCTCTTTTCTCCGATGTGCAATTTTGGATTATTAAAAAGCAGGCATCCATAGGTGTGCAGACTTGTATCTGGAGCTCCCCTTGGAGTCTGCTGACTCAGCTGGTTTAGTTGGTCAATGTGTCTGCTTTCTTGTCAGCACTGGGCTACTTTTCCTATTACAGCCGAGTAGTCACCTTCACCTCTAGCAGCTCGTCCGTTATGCAGTCTTGCTTCAGCTACTCCAGGACTTTTGTGTTCCCATACAAAACTGAAGATTGATTTTCCATTTCTCTGGAGAATCGTGTTGGGATTTTAATGGGAATTACATTGAATTTGTAGATTGCTCTTGGTAGGATGTCCACTTTTACTATATTAATTCTACCATTCCATGAGCATGAGAGATCATGTCATCTTCTGAGGTCTTCAGTTAAGTGTGCCAGTTCTCTTTGTTACTTTGATACAACTCCATGTTCCATATTTAAGAATATGAATAGAGATGTGTTCTATCCCCAGAATCTGCATGGTAGAAGGAGAGAGGACTAGTGCCTACAGCTTATTCTCCAGCCTCCACACATGTATACATGTAAAAAAACAGGAATACACAACTAATTTTTAAAAAATCTCAAATTTTTCTGACTTTAG
Seq C2 exon
AAGAACAACTCATTTCCTGATGAGAATAATATTGCAAGGCTTCAGGAGGAACTCATCGCTGTGAAGCTGAGGGAAGCCGAAGCCATTATGGGTTTGAAAGAACTTCGACAGCAAGTCAGAACCTTAGAAGAGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831:ENSMUST00000112642:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PU(90.9=88.9)
A:
NA
C2:
PF065706=DUF1129=PD(4.5=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTCCACCTACAACGAA
R:
CTGCCAGTGCTCTTCTAAGGT
Band lengths:
270-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types