RnoINT0056968 @ rn6
Intron Retention
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2977679-2979089:+
Coord C1 exon
chr14:2977679-2977813
Coord A exon
chr14:2977814-2978948
Coord C2 exon
chr14:2978949-2979089
Length
1135 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TAATTTTTCTCTGACTTTAGAAG
3' ss Score
5.81
Exon sequences
Seq C1 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTTGTGCTGCAGTTGGAGAAGGAGTTGGTCCAAGCCAGACTGAGTGAAGCTGAGTCTCAGTGTGCCCTGAAGGAGATGCAGGACAAAGTGCTGGACATAGAGAAG
Seq A exon
GTAAGAGACTGCATAAATGGTACCTGCTTCTCAGTCCGAGGGAGATGTACTAGATGCTTGTTAAGTACTTATTAAAGAGTTGACTTGGACTTGATGTTTTTTACACATGAGGAACTATGAGTATTAGTTAATTGAATCAGCAAACAAGGAAATGTTGCTAGTTGAATACAGGAGGTAGCTTGCAGCACATAAAGCCAGGAAAGGTGGCACACACCTAAAATCCCTAGCACTTGGGAGGTGGAAGTTCAAGGTCAGTCTTGGCTACCTGGTAAGGTGAGGGTCAGCTGGTGTGCATGAGACCCTGTCTGAAGAGAGAGGGATAGGCAGAAAATAAACGTAACCTTAAGGCTGCCAATTCAGAAAATCCTTCACTAGGTCAGTGAGCTCAGGATTGTTCTACCTCCTCTTCAATCCGACCAGGGCATCTGGTCTTTACATTGAGGACTTTGGTCCATTCGGGGTTGAGTTTGGTGCAGAGATAAATACAGATCTATTTGCATTCTTCTTTAAGCAGCCATCCAGTTTGATCAAGTATTTGTTGAAGATGCTATCTTTTTTCCAGTGTGTAGTTTTGGATTCTTTGTTAAAAATCAGGCATCCATGTGTGTGGACATCTGGATCTTCAGTTTGATTCCGTTGATTTAATTGGTTCAGTTAGCCAATGTGTTTGTTGTCATGTCAATACCACGCTATTTTTATTATTATAGCTGTGTGGTCAACTTACCTTCTAGCAGTACTCCCTTGTTCAATCTTGTTTTAGCTATTTCTGGATCTTTGTGTTTCCATACAAAACTGAAGATCGATTTTTCAATTTCTTTGAAGAGTTTTGTTACAATTTTAATGGGGATTGCGTTGAATCTGTAGATTGCCCTTGGTAGGATGGCCGCTTTGACTATATTAATTATACCAGTCCTTGAGTATGGGAGCTCATCTCATCTTCACAGTTAACTGTGCCAGTTCCTCTTTGTTACTTTGATACAACTCCATGTTCCATATTTAAGAGTACAAGTAGAGTTCTATCCCCAGAGAGGGCTAACTCCTATAGCTTACTCTCCAGCCTCCATACATGTATGCATGTGTACAAACAGGCATATACAGCTAATTTAAAAAAATCTTAATTTTTCTCTGACTTTAG
Seq C2 exon
AAGAACAACTCATTTCCTGATGAGAATAACATTGCAAGGCTTCAGGAAGAACTCATTGCTGTGAAGCTGAGGGAAGCTGAAGCCATTATGGGTTTGAAAGAACTTCGACAGCAAGTCAGAGACTTAGAAGAGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039:ENSRNOT00000061630:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF065706=DUF1129=PU(90.9=88.9)
A:
NA
C2:
PF065706=DUF1129=PD(4.5=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTCCACCTACAACGAA
R:
CTGCCAGTGCTCTTCTAAGTCT
Band lengths:
270-1405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]