MmuINT0059571 @ mm10
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116227842-116228237:-
Coord C1 exon
chr11:116228059-116228237
Coord A exon
chr11:116227981-116228058
Coord C2 exon
chr11:116227842-116227980
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CCGTTGCTTCCTCACCGCAGAGC
3' ss Score
9.76
Exon sequences
Seq C1 exon
GGCACAGCACAGCGCCTTCAGAGTCTGGGAGCGGAGAAGGAGGCAGCCCAGCAGGAGTGTGAGGCGTTTCTGTCTACCAAGCCTACGGGCTCCGCTGCCCTGCAACTGCCCGTGGTCCTCAACAGTGTGAAGAACAGATACAATGATGTGCAGAGCCTGTGCCACCTCTATGGGGAGAA
Seq A exon
GTGAGTGCCAGGGAGAGCCCGTCTAGAGGGCACTGGAGTGTGTGACTGAGCTGATTGACCGTTGCTTCCTCACCGCAG
Seq C2 exon
AGCCAAGGCTGCTCTGGGCCTGGAGAAGCAGATCCAGGAGGCAGACAGGGTCATCCAAGGCTTTGAAGCCGCCCTGGCACTTGAGGGCCCCGTCCCCGAAGGCTCTGGGGCACTGCAGGAGAGGGTCAGCGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282:ENSMUST00000037007:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCTACCAAGCCTACGGG
R:
AAGCCTTGGATGACCCTGTCT
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types