RnoINT0057010 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105107229-105107629:-
Coord C1 exon
chr10:105107451-105107629
Coord A exon
chr10:105107368-105107450
Coord C2 exon
chr10:105107229-105107367
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTGTTGCTTCCTCACCTCAGAGC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGCACGGCACAGCATCTTCAGAACCTGGGAGCTGAGAAGGAGGCAGCCCAGCAGGAGTGTGAGGCGTTTCTGTCGACTAAGCCTACAGGCTCAGCGGCCCTGCAGCTGCCTGTGGTCCTCAATAATGTCAAGAACAAGTATAGTGATGTGCATAGCCTGTGCTACCTCTATGGGGAGAA
Seq A exon
GTGAGTGCTTGGGAGAGGGCCGTCCTCTGAATGGTCACAGGAGCGTGTGGTTGAGCTAACTGGCTGTTGCTTCCTCACCTCAG
Seq C2 exon
AGCCAAGGCTGCTCTGGGCCTGGAGAAGCAGATCCAGGAGGCAGATGGGATCATCCAAGGCTTTGAAGCTACCCTGGCACAGGAGGGCCCCATCCCTGAAGGCTCTGGGGCACTGCAGGAGAGGGTCAGCGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.277
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGTGAGGCGTTTCTGTC
R:
ATCTGCCTCCTGGATCTGCTT
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]