MmuINT0060073 @ mm9
Intron Retention
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:46330983-46332260:-
Coord C1 exon
chr8:46332101-46332260
Coord A exon
chr8:46331159-46332100
Coord C2 exon
chr8:46330983-46331158
Length
942 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCATTCTGTTTGTTCCTTAGGAT
3' ss Score
11.43
Exon sequences
Seq C1 exon
TGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGG
Seq A exon
GTGAGTATTATTGCTATTCTCCTGGGATTGCCATCATGAAGGTGAAATCTGGGACTATCATAAGAGTCAATAAACACTTTGAAAATGTAAATGATCCTGTTTCCTAAATTAATTCTCTCTGTGTGGGCAGGGACGATGGTGTAGAAGAGACCAGTCCTCATCATTTGGCCACAATAGAACAGGGGCAGGAGCAGAGCAGATTGCCCACCTCTGCCTTTTCATTCAAACGCAAATTATTTCCATTGTCTTCCTGATGGTGCCTGGTGGCGAAGCACAGGGCCAGAGTGAAGCTTACAATCCTCAGCTCTCTGAATCCTGGTTACCCTAGTCTCTCTTTCTCTGCCTCCGAATGCTTAGAGTTCAGCACACACCATCAGACCAGATCCCCGCACTTAGCATTGCTTTTCGATATTGGCCAAATGTGAACATCTTAGCCGGGGAAGTGTGTATCTCGAGGAAATTCGGTTGAGTGAAACCTTTCTGTGCTACTTTTAGTGCCTCTGTTGCTTCCAGACACAGGTTTAGAGGCTAATCGTTTTGTTAATTTTTTTCCATGCATGGATGCATTATGCACATAATTCAATGCTACACTTGAGATCAATAGTCCCCTTTGCAAGCACATATGAAAAAACACAGAAAGTCCCAGTGACTTTTCTTTAAATTCTGCCCAAGACAAGGTTGAGACTAATACCCAACTCTCCTGAGCTTGGAGATGTGCTGGGGAGTAGAAAGACCATTTATTTAAAGTGTCCAATATTAGTGCAAGAACTAATCCAGTGATTTCACTGTAGAGGAAATATGTGACTAAAAGTTTTGAGAATAAAATCACTTTTTTTACCACCTAAAGGTAGAAACAGACACAGAGTATAAATAACTGTGAAACACAAATATTTGGAAATTGCCTAGTGATAGATTTTTTTTTCCATTCTGTTTGTTCCTTAG
Seq C2 exon
GATAGAGACACCTAAAAAGCTGCGTGTCTACGGTGGCATTGTAAATCAATCAGAAATAAATGAAGGGACTGCTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAGTATACGACAGCAGAAAGTGGGTATGATATTGCCCTGTTAAAACTGGAATCAGCCATGAATTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-F11:NM_028066:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=81.5)
A:
NA
C2:
PF0008921=Trypsin=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACAACTAAAATCAACCCCA
R:
TGTGTAATTCATGGCTGATTCCAGT
Band lengths:
334-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: