RnoINT0057461 @ rn6
Intron Retention
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50197304-50198555:+
Coord C1 exon
chr16:50197304-50197509
Coord A exon
chr16:50197510-50198384
Coord C2 exon
chr16:50198385-50198555
Length
875 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
CTGTTTGTTCCTTAGGACAGAGA
3' ss Score
1.56
Exon sequences
Seq C1 exon
TATGCACAACCAAAATCAGGCCCAGGGTGTTCGGAGGAGCTGCGTCTGTTCACGGCGAGTGGCCATGGCAGGTGACCCTGCACACCACCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCGGTGGATATTGACAGCGGCTCATTGTTTCTCTGGGTTAGTATTAACGATATTCGCCTGGGGTCGTCATCACCAAGTACAG
Seq A exon
GTGAAACCTGGGACTATCATCATAGTAAATAAACACTTTGAAAATAGAAACAATCCTGTTCACTAAATTAACTCTCTCTGTGTGGGCCGAGATGACAGTGTAGAAGGACCCAGTACTCATCTTTGGCCGCAGTAGAACAGGTGCAGGAGTGTTGTTGCTTGGACGCCATTCTGCCTTTTCATTCAAATGCAAATCATTCCCAATGACTTCCTGCTGGTTCCTGGCGCCAGTGCACAGGGCCAAAAGAAGCTCAAAATTTCCAGCTCTTTGAATCCTTCCCCCATTTTCTCTTTCCCCTAAATAGAGTTCAGCACATGAATCCCACACTCACATTGCTTTTCAGTATTGGCCAAAGGTAAGTAACTAGGCTGGGGGAAGTGTGTATCTCAAGGAAATTTGGTTGAGTGAAACTTTTCTGTGTGTCTGTTGTTTCCAGACACAGGTTTACGTGATAATTGGTTTTGTTTTGTTTTTTTTTTTCCATGCATGAGTACACATAGTTGTATTTCAATGCTACACTGAGGTCAATTGTCCCCTTTATAATCATGTATGAGGAAATACAGAAAGTCCCAGTGATTCTTTTATTCTGTCCAAGACAAGGTTGAGACTAATACCCAACTTTTCCTGAGCGGGGATGTTCTGGACAATCAAAAGACTATTTATTTAATGTATTCGATATTAGTATAAAGTACTAATCCAGTGCTTTCCTTGCAGGGGAAATGTGTGAGAAAATCTTTTAAGAATAAAATCACTTTTTTTCCCACCTAAAGGCAGAAACTGCAGATTATAAAACAAACAAACAAACAAAAAACTATGAAACACAAATATTTGGAAATCGCTTAGATTTATTTTTCACTGTTTGTTCCTTAGGACAG
Seq C2 exon
AGACACCTAAAACTCTGCGTGTCTACGGTGGTATTGTAAATCAATCAGAAATAAATGAAGATACCACTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAATATACATCGGCAGAAAGTGGGTTTGACATTGCCCTCTTAAAACTGGAACCGGCCATGAATTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684:ENSRNOT00000041946:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=81.5)
A:
NA
C2:
PF0008921=Trypsin=PU(3.1=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCAAAATCAGGCCCAGG
R:
AGAGGGCAATGTCAAACCCAC
Band lengths:
342-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]