DreINT0165408 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18231468-18232952:-
Coord C1 exon
chr15:18232790-18232952
Coord A exon
chr15:18231653-18232789
Coord C2 exon
chr15:18231468-18231652
Length
1137 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GACTTGCCTTCTTATTGAAGTTA
3' ss Score
4.39
Exon sequences
Seq C1 exon
AGTGCGGCACCAGAGCAAAGTTACCCAGGATCATTGGAGGAGTGGAAGCTGCTCTGGGCCGATGGCCATGGCAAGTGAGTCTCTACTACAATAACCGTCACATCTGTGGAGGATCCATTATCACCAACCAGTGGATAGTTACAGCTGCTCATTGTGTGCACAA
Seq A exon
GTAAGTTGAAAACATTTACAATCACTTTGGCTTAAATTTATGGATGAAAATCTGCCGTAAAACATAAAGAAAAATCAAATGGGGAAAATGGTTATATATATTATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATACAACAGTTCTGTCTGGATCTCGAATCTGATTGGCTGATAGCTGTGATATATTTAAGTAAAATCAGCATCCGTACAGCCTCTTTACCCTTTGTGTATTACTCCGCCCACATACAGCCAGCTACTTTTGAGGCTTTTTTAGTCGAGAATGTAGTTGTTTTGATTGCAACTTTGCAGTTTATTTGCTAGAATAGTGCCTATTTTAAAATATTTACAATTTCTGAGAGCTCATCAGCAGCCAAAGACAGTTGACGTTGTCTATCCACAAGATGGCGCCAGAACCGCATGATAAGCCCTTGCTCGGTGTGTTTTCCTGAGCGCGAATAAAATGCTGAAAAACGAAAGCCTCGTGGTTTTTAAGGTAGACCGAATAAAGTCAATAAAAAGCTGTAAATATGAAGCTGGATTCAGCCTTGTCCCTCCTTATCGCAAACACAACAGCAGTCTGGTGAGAAATCTCTGTACACGGATGGCATTTCTTGTCACGTTCAAGCTTATAATCTTAAAATGTGAGCAAAATTTGCTGTTTTGTCATCACCTTAAGGGGGTCACACACCAGAAGTGCCACTTCACATTACGCTATAGAGAATCATTCAAATACTAGCTCTAAAGTGACGTTGGTGAATTAGTAACTGCTTCTGCTGTTCTGACGTCAGCTGCATTTGTAAATGAATGGCGGAAGAAAGTAGTTCCTAATACAAAAGGGTTTTAGACTCTGTCTGATTTTCTTTTTTATGAACAAGTTTGTGCTGTCGAACTGTTGTATAAACGCAATATCACACTTGTAGCAGTGTGTTATGGCTGTATATCAGCACTGGGGGTCGCTAAGGCACGAGGCCGCAAGGCACGCCTCCCACCAGTGCTGATATACAGCCATAGCACACTGCTACGAGTGTGATATTGCTCATATATCATCTGACTTGCCTTCTTATTGAAG
Seq C2 exon
TTACAGGCTACCTCAGGTGCCCAGCTGGGTGGTTTATGCAGGTATCATAACCAGCAATTTAGCTAAACTTGCTCAATACCAAGGCTTTGCTGTGGAGAGAATCATCTACAACAAGAATTACAACCACCGGACACACGACAATGATATCGCTTTGGTGAAATTAAAAACTCCACTGAATTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(18.9=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCGGCACCAGAGCAAA
R:
AATTCAGTGGAGTTTTTAATTTCACC
Band lengths:
342-1479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]