MmuINT0162749 @ mm9
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48920293-48921407:+
Coord C1 exon
chr9:48920293-48920455
Coord A exon
chr9:48920456-48921228
Coord C2 exon
chr9:48921229-48921407
Length
773 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGTAGGTTTCTATGTGCAGTTT
3' ss Score
2.14
Exon sequences
Seq C1 exon
AGTGTGGGGCAAGGCCTCTGGCTTCTCGAATAGTTGGCGGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTAGCGTGATGCTTGGCTCCCGGCACACGTGTGGGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGCCCACTGCATGTACAG
Seq A exon
GTGAGTCTTGGTGGTGGATGGGGGGTGGGGGTGGGTGTGAGTCACAGTCACCTTTCTGTTTGTCACTTTGTATGTCCTGACTAAAATCTCTGTTTCTAGCTGTCTGTCTCCAGGAAGTGAGGGCAATGTCCTTGTTTAATGCCAAGTTCAGCTCTGCATCAATAGCAGCCATAACACAAAGACTGGTTCCTTATGTTCCCTGTCCTCTATGTGTGTATGCATATTCCCTTGTATGTGCATGTATATGCATGTGTGTATGTGTGCTCTTGTGGGTATGGATGTGCACGTGGAGGCTAGAAGTCAGTGTCAAGTGACTCAATTGCTTTCCACCTTATACTCTTTAAGATTTAATTTTAAATTATGCGTCCATGTCTACATCTTTGTGTGTGTATGTGGGTCGTCCAGCACACTCCAGGAATCTGCCTATCTCTGCCTCCCTAGTGTTAGATTATGGACATATACAACGGTGCCTGGCTTTTTATGTGGGTGTTGGGGGATCTGAACTCAGCTCCTCACGTTTGGATGGGGAAAGCACTTTGCTGACTGGACTGTCTTTCAGTCCAGCACCTGAGCAACTTCTGCATGCCCAGTGTCTTGCCAGCCACTGGGGATAATATTAAGAAACATGATTTCTGGGTTCCAGGAGCTTCCCGGCTTGAGACAGTGGTCATTAATGGTTTCCCTAGGGAGTTCCCTCCACCTACCACCTTACTTCTATCCACCTTCCCTTCACCTTTCCTCCCTCCCTGGGCTCAGTAGGTTTCTATGTGCAG
Seq C2 exon
TTTCAGGCTGTCCCGCCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACGGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGTGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-Tmprss5:NM_030709:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGGCTTCTCGAATAGT
R:
TGAGAAGTTGATTGGTGTCCGG
Band lengths:
328-1101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: