RnoINT0153418 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53423715-53424936:+
Coord C1 exon
chr8:53423715-53423877
Coord A exon
chr8:53423878-53424757
Coord C2 exon
chr8:53424758-53424936
Length
880 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGTAGGTTTCTATGTACAGTTT
3' ss Score
1.41
Exon sequences
Seq C1 exon
AGTGTGGGGCAAGACCTCTGGCTTCTCGAATAGTTGGCGGTCAAGCTGTGGCTTCTGGGCGCTGGCCGTGGCAAGCTAGTGTGATGCTCGGCTCCCGACACACATGTGGGGCCTCTGTGCTGGCACCCTACTGGGTAGTGACTGCCGCCCACTGCATGTACAG
Seq A exon
GTGAGTCTCAGGGCCACGTGGATGGGAGGTGAGTCACAGTCACCTTTCTGTCTGTCTTTAGTATGTCCTGAATAAAATGTCTCTGTCCTGCTGTCTGTCTCAACGAAGCGGGGGCAGTGTTCTTGTTTAACGCCAAGTTCAGCTCTTCATCAATAGCAACCATAACACAAAGACTTACGTTTCTTATGTTCCCCATCCTCCATGTGCATATGCACATTCCCTTGTATGTGCACATGTATGCATGTGTGTATGTGTGTTTGTATGCACATGTGGAGGATAGTCACATGACACTGACTTCTTCAATTGCTTTTCAACCTTACACTTTTAAAGATTTACTTTATTTTAAATTATGTGCCCATATCTACATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGTGTGTGTGTGTGTGTATTTGGGGTGTGTGTCTGGGATGTGTGTGTATGTATGTGTGTCTGGGTGTGTGTGTGTGTCTGGGGTATGTGTGTATGTCTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTTCCAGCATGCTCTAGGGATCTGCTTATCTCTGCCTCCCTAGTGTTAGATTATAGATTATAACCATGCCTAGCCTTTTATGTGGGTATTGGGGATCTGAACTCAGCTCCTTATGTTTGCGTGGAGAAAGCACTTTGCTGACCAAACTGTCTTTCAGTCCAGTCCCTGAGCATCTACTGCATGTCTAGTGTCCTGCCAGCCACTGGGGATAATATTAAGAAACATGACTTTTGGATTCCTGGAGCTCACTAATGGTTTCCCGAGGGAGTTCCTGCCACCCGCCACCTTACTTCTGTCTTCCTTCCCTTCCCCCTCCTCCCTGGGCTCAGTAGGTTTCTATGTACAG
Seq C2 exon
TTTCAGGCTGTCCCGTCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACAGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGCGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGGGGCAAGACCTCTG
R:
CTGAGAAGTTGATTGGTGTCCGG
Band lengths:
342-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]