MmuINT0060077 @ mm10
Intron Retention
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45255204-45261081:-
Coord C1 exon
chr8:45261026-45261081
Coord A exon
chr8:45255367-45261025
Coord C2 exon
chr8:45255204-45255366
Length
5659 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCGTGTTTTTTTCTTCACAGAAT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GATGACCTCATTACATCAGGTGTTATATTTTATCTTTTTTGCCTCAGTTTCTAGTG
Seq A exon
GTAAGTTGCTGTATTTATTTTCCCCTAACATAATATTTTTTATTACTTGAGAGTTTCATACAATGCACCCTGATCACACTCACTTTCCATTCCTTCTAAGTTCACCCTCCCACTCTTGAGCCCTGCCAGCTCACTCCCCCCTTCTTGAAAAAAAATCATCAAGTCAATCAATTTGTGTTGAGAATATATACTCGTTGGGAATGTGATCAAACTCCCAATGGTCAGCCCCTTAAAGAAAAGTGAGTCTTTTTCCTCCCCCACTTCTCTCCCCACTCCCTTACCCAGTTGGAAGCCATCAACTGTGAAGAGTTATACTTCAGCATCTTTACTACAATTTTAAAGGACTCTCTTCAGTATTTAAGTATGGCTTAGAAATAGCTCATTCCTTGACCTGTAATGTAGGAAACAGCCTAAGTCCACAAAAAGAAATTACACTTCAGACCCCATATATTGTGGAATAATTCCATGCTGTGAACTCCAGGGAAGGAAATAGAGTCGTTTATTTTCCAGTGAAAGCTCCCCTTTAATACATCAAAGAAAGAAAGAGATTTAAATATAGAATTACAAAGAGTCTTCACCTATATCATCTGAATGCTAGTAATATCTGTCTATAGAGTTGCATCTCTATCTACCTACACAACACATTGCCATGATTCCTAGGAGCAAGATTAGAAAGAGAAGACTCGACTCACCTCATTGATTATTATTCCATAAGGGATTCAGTCTAGTATCTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCCGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCACGCACACACACACACACACACACACACACACACACACTCACCAATTCCTGACTGAAAATGTTATAGAAAAATTAATGTGTGGCTTACACATTTGGTTAATTTACCCCTTGCAATTATGCTTCCATTCTACATTACATCCAGTAAATACATTGCTTACCATTCAGTAGAATGAAATGGGAAGTTACCTCACCAATACTGATCTTAACAACTTAGTGTAAGCACTTCTTAAAATAATTTATTTATGTTATATTGAATGCCTGAGACTGCCATTGACATATTAAGCATAGTTAGTTCTTTTTGGTGTGACACATGTGAACAGTAGCAGATCTAAAATAAAATAAACATATGTAACATATTAAATTATACAGATTATAGCTTAATTTTTCTTTGTGATTAGATTGATTTTCAGGTTATTCCTTCATTATCAATGTTTTGAAATCCCATTGTTATTTGTACTGTCTTGTTCAGTACTGTTTTGACATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGACACAGAGTTTCTATGTGTAGCCCTGGCTGTCCTGGAGCTTGATTTGTAGACCAAGCTGACCTCAAACTCAGAGATCTGCCTGCCTCTACCTCCAAGGGCTGGGATTGAAGGTGTGCACCATCATCGCTCGGCAGCCTGTCTTAACATCTTAAACACTGAGTTCAATAACTGTGTCGATTCACAAGGACATTCTGAGAATTATAAGACTTTTTTGCTTATGAATATATATATGCAAATGTAACTGACAAAATATTATCCATTGTGGTTGTATCACACTTAAAAATCTCAGAGCCGAGAAAGTTGGGGCAAGATGATTAAAAGTTCGAGGACAGGATGGGCTACATAACAAGGTTCTGTCTCAAATTGGCTATACCAAACCGTCCAACACATATTTTAAAGAAAAATAAATGGGAGGCTAGAGAGATGGCTCAGTAGTTAAGAGCACTTAGTGCTCTTGCATGGGATCAGTTCAATTCTCAGCGCCCATGTTAGATAGTTCACAACTTCCTATGACTCTAACTTCCAGGAATACAGCACCCTCTTCTGGCTTCTGTAGGTACACACACACACACACACACACAGACGGCATACGTACATACATACATACATACATACATACATACATACATGCCTACATACACATGTACATGCATACACAATAAAAAAGTTTTTAAAATCTTTTTTTTTAAAGAAAGAAAATTAAAAGACCAATTACATTGGCATATTTTGGCCAAGTTTGCTTAATTCTAGGAACAAGGAGTTACTTTAATCTAAGAAAAACAATCAATGGATGCAATGTAGATCCAAAGGAAGTGAAAGAAGAGAGTCCTACAGAGATTTGTCATTTGTCTTCCTGCTATCGGGCAGAGAACCAGCAAGAGAGAAACGTGGGCATTTGAAGCCCACTCAGCCGTGTCATAGCACAAGTTGGGTCTTCACCAATGGACAGAAGGTTAAACAAAATATAATATCACAGTATGCACATGCAACACAAAACAGGATATTACTCAGCGTGTGAGGAAGAAAATTCTCCCTCATACTGGGGCATAGCTGAGCCTTCGTGGTTTTATACTCAACGAAATGAGTCATTTACAAATGAACACATGACTGAACCCCTAACGTTTGGTTCCCAGAGATGCCGATTTCAGGAAAACAAAAGACCGAAGAGAACTGACCAGGGGCTAATGCTAATGACTATTTAATGGGTACAAGTTTTCAGTTGGAAAAGCTGAAGGAATTCTAGAATAGTGGTGGAAATTGTACCTAAGGTACATACTTCATTCCACAACTCTAGAGACCTGAAAAGGGCCGGAGTGACAAACTTTATGTCATATATATTTTGCCATAGAAGAACAAAATTAAAATAATCTAACACATCGAAGATTTTAAAGATTTTCATAATAAAATAGTTTAGCAAACTCAGAACTTTCCCAATGACTAAGTAGTACTGTAAAACAACAACAACTAGAAAAACATTCAAACCAAAAGTTTTCAAGAAATCTCATATGTAATGGTGACTGAAATAGTGTTTCCCTGAGGTACTGGGGTAAGGCAGGAGTATCCACAACTTGGCTCCTGTGAATAGGAAACAAGGAACAGAGAGATGCAAGCATCTTCAAAAAGTTGTCATAGGATCCATCATGGACATTCCAGGAGGGGTTCAGTTCTACTTTTAGTTTTCTGTGACATCTCATTACAGGTTTTGATTTTTTCCCCCCATAGCTTCGCCAGCATGGAAATTTATTCACAAGTACCAAGTCAGGGAGTCTGCCTATGTGTCCATCAATAGATGAATGCAAAGAGCAAACACTGGATGTAGGCACAGTGCAGGGGGCAGGGAGGGGTGGCATGTTCTGCATTTAGCTAAAATGGTTGTTTTAGTTTTTACTAATTCTTCAAGAATGCCATATACCATATTTTGCTAATTTTTACCTCGACTCCCCAAACTCCATCCAGAACCCCCCATTCTGTACCCACCTAACTCTGTGTTCTCCCTGTTTCATTTGGCCACAGTGAGGAATGAAATCGTGCCATTTGTGTAACAATGGCTGTGACTGGGCATCATCATTATTCAGTGAGATAAGTCAGATTGAAGAAGATAAATATCCCATTTTCTCAAATTTGTGGATTCTAGACCTTATATGGATACATAAAATCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTGAGTGACACACTCTAGGCTCCAGAGTCTAGGGGAATGACAGAGACTAGAAGGAAAGAGGGAAACGAAAAGATATGAAGAATAAATATAGTCGAAGCACATGATACATGCCTATGATATTATGATGTATACACACCTATGCAGGTGTCCCATGAAGCCCCCTGCTATGCAACGAATACGTGTCAATAAATGTGTTGAGAGACTATCTACTGTCACTTCCCTTAAACATTATATTAGAGATCCTGTGTAGCACAGTAGGGAAGGTCGAAGGACCTAAGAGTCAGGAGAAAGATGGAAATTAACTGACTCTTCCCATAAATGTGGTTATGTACATAGAAAAATTCAAAGTAATGAATGCACTGATTATTTCAGGCAGATCAGCAAGGAGTTTACAAACTCGATGGACCCCCGGGAGTGGAGGCACACACTTGTAATCTCATGACTCAGGAGGCAGAGGGCACATCAGAGACCCTAACTCCAGCTCTTCCGTTCAAAATCTTCAATATACAAACAGTAGCCAACTCTCGCCAGTACTAGGAACTGTACTGAGATTATGAAAGTCAATATTATAGGTTAAATGATTCAAGTAGTGGCTACATCCTAATCAAAACTGCACATTTATTAATCCTTTAAAAATCAATTCAACTTATCAAATCCTGGTGTTGTGCTTGATAAGAACATTTTAATGTGTTATGATGGCTTAATAGTAAAATGTTGCATTTCTTAGAGTTAACAGGTAAACTGTGAGGTGGGAATAGACTGCCAATTAGCTGGAAACAGACGCAGTATGGTTTGGTGGGAGACAACACTGAACTTGGAAAAAGAAGTCGGATCTCTATGTAGCTCCTGGGATACTTGCCTGTAGTGGAGAAAACCATGTTCCCTACCAAGTCTCTGCTGAATTTTGGAAATGGATCTGTAGTGAGGTTGCTCTTCCTCCCCACAAATCCCTTCCGAGGCCCCATGGACGCAGCGGAGCCTATCCTTGGAATAACTTTTCTAAAGGCATGGACTAAAAATATATAGGGTTGCTGGGGAAATTAATTATATTGAAATATGAGTAGCTAAAGTGGAAAATACTCAGTACAGAATTAGTTGTGGCTCGGAGTTAACACCTTACATGACATTAGTGGCATGCCCAAAACTGAATAGAAATAACCAACAAATTATCGACAAATCATAATGATGTTATATCTCATCATCACATACATGACAAATACTAATCATGTTAATTGATTACATTAATAATACAGGTATGTATGTACCACATTTTGGTTAGGGAATCAATGAAAAACCACATGAGGTTTTTTTGAGCTCGTTGGTTATCTAGGTCCTACAAGCCTCATAGGAGGGTTTTGAGACTGCTATGCACCTACAATCCTCTCAAGACATGACTGATGGCTGTTACAGTAGTCTATATTTGAGTTAAATTTTATTCTTCTGGAAGTACTTCCACGTGAGTCTGGTAATGTTTTCAAGTTATAAAGAGAAATGGGCTAGCAACACCTCTCCATGGGCATGTATGGCTGCATGAAGTAATCTTTTATTCAGTCACTAGGCAACCTACTGTGTGAATTATTAGCTATCTCTTCTAGCAACAGAGCACTTTTGAATTTTTATGCATTTTGGCTTTTTAAAAACTAAAGCTGATGTAAGGTTTTCGCTAAATAGAACTCAGTAAGTTTTCCCTGGTAAATGTTGGTCATGAGACCATTTTTAATGTTCGCATGACATCATACAAGGGCCCCTCAGTCTTGGCTTTTAGTTTGTGGTAGTGTCAAAACAATAAATGAACGTAAACACAGCACACCCTTGCTGACCCCCTAGAGGGGTTTCATGGGGACCGTGTTCTTCTTGCCGGTCAACAGCTGAGAAATCACTGAGTTGCTCCTGCAGCCTTCCCAAGACAATCACTCATAAATGTGACAACACGGAGGGCCCCCATGTTGTTTGTGATTTATAGTTCCATCTGGGGCTGTTCACTGAAGAGCGTTGCCCGATCTGATGTCCGAGGTCAGGCATATTTAGCACTGACTTTTTAACAAACCATGTAACGAGGTAAGTGCCCACCAACATCTGCAGTAATGTGCGCCCGCGTGTTTTTTTCTTCACAG
Seq C2 exon
AATGCGTTACTAAGGTCTTCAAAGACATCAGCTTTCAAGGAGGTGACCTGAGTACTGTTTTCACACCGAGCGCCACATACTGCCGCTTGGTCTGCACTCACCACCCACGGTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCGGATGATCCTACCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645:ENSMUST00000034064:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0002421=PAN_1=PU(63.1=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types