MmuINT0062857 @ mm10
Intron Retention
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125505440-125506385:-
Coord C1 exon
chr2:125506339-125506385
Coord A exon
chr2:125505790-125506338
Coord C2 exon
chr2:125505440-125505789
Length
549 bp
Sequences
Splice sites
5' ss Seq
CCAGTGGGT
5' ss Score
3.07
3' ss Seq
GGGACTTGTCTGTGTTGCAGGAC
3' ss Score
7.79
Exon sequences
Seq C1 exon
CGGAGCAGAGCAGCCACCGCCGCCTGAGAGTCCGAGCCGCTAGTCCA
Seq A exon
GTGGGTCTCATGGGGTCCCGCCAGGGTCGGGCGGCAGGCGGGTGGCTGGAGGGCCGTTTGCGCGGCATCCAGGGCAGGAGGCCGGGCAGGGTGAGGGGATGTCTCGAGCATCTGCAGCTGGCCCTCTCTGCCTGACAGCTGCAAGATCCGGGACTGCAGTGCCCTGCTCCACGTCGGATGCAGGGGACTGGCGGGGTTGGCCATGACCCGGTATGTGGGCGGAGAGGACCCTTTTTGGAGAGCTGGGGCGTCAGCCGTCACCGCGCGCAATCAGTGCCATTAAGACCGTGTAGGCAGTCCGCTCGCGGGACGCCTGGGCTCCCTAGGGACACGGTACTTGGCGCCGCGAGGCCACAGGGTCCGCGGATGCCAGTCGCCGGGTTCTGGCTCTGCAGCTAGTTGGGATCGAGTGGTCCTCGTTCCTCCGAGTAACTGCGCCACGCGCAGGCGGCGCGCGGTCTGGGCTCGGCACCGGGGACTGCGAGCTTTCAGCATCCCGGAGCCCTGAGTGTCTCACCTCCCCGCCTTGGGGACTTGTCTGTGTTGCAG
Seq C2 exon
GACAGGCAGGGACTACCCGAAGTGGGAGCAGTCCCTGGAGAAGAAAGCTGTAGGACCCAGGCCGGGGACCTCTCTGCATCAGGACAGCCGGACAGTGAGACAGCGGGACCCCGGAGACTCGGGCCGCTGGAAGGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGCGAGTGGCGGCCGGCGGCACCATGCGGCGAGGAGGGCTGCTGGAGGTCGCGCTGGCGTTCGCCCTGCTCCTCGAGTCCTACACGAGCCATGGGGCGGACGCCAATTTGGAGGCTGGGAGCCTGAAGGAGACCAGAGCCAATCGGGCCAAGAGAAGAGGCGGCGGAGGACACGATGCGCTGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204:ENSMUST00000028633:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.273
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCCGAGCCGCTAGTC
R:
CTCTTCTCTTGGCCCGATTGG
Band lengths:
344-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types