RnoINT0059538 @ rn6
Intron Retention
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117765123-117766120:-
Coord C1 exon
chr3:117766026-117766120
Coord A exon
chr3:117765462-117766025
Coord C2 exon
chr3:117765123-117765461
Length
564 bp
Sequences
Splice sites
5' ss Seq
CCAGTGGGT
5' ss Score
3.07
3' ss Seq
GGGACTTGTCTGTGTTGCAGGAC
3' ss Score
7.79
Exon sequences
Seq C1 exon
TGGGGCAGAGACTGTGGGTGCCACAGGCAGCCACAGCTGGGACAGCTGCGGAGCAGAGCAGCCACCGCCGCCTGAAAGTCCAAGCCGCTAGTCCA
Seq A exon
GTGGGTCTCACGGGGTCCCGCCGGGGTCGGGCGGCAGGCGGGGGTCTGGAGGGCCGTTTGCGCGGCCTCGAGGGCAGGAGGCCGGGCAGGGTGAGGGGTTGTCTCGAGCATCTGCAGCTGGCCCTCTCTGCCTGACAGCTGCAAGACCCGGGACTGCAGTGCCCTGCTCCACGTCGGATGCAGGGGACTGCGGGGCTGGCCGTGACCCGGTATGTGGGCGGAGAGGACCCTGTTTGGGGAGCTGGGGCGTCAGCCGTCACCGCGCGCAATTAGTGCCATTAAGACATTGTAGGCAGCCGGCTCGCGGGACGCCGGGGCTCCTGGGGACACAGTACTTGGCGCCGCGAGGCCGCAGGGTCCGCGGATGCCAGTCGCCGGGCTCTGACTCTGCAGCCAGCTGGAATCGAACGGTCCTCGTTCCTCCGGCTAACTTGCGCACGCTGCAGGCCGGCGCTGCGGGCTGGGCTCGGCTCCGGGGGNCTTGCGANCTTTCANNCATTNNNGGANNNCNTGAGTGTNTNNCCCCCCCCACCCCCCCGCCTTGGGGACTTGTCTGTGTTGCAG
Seq C2 exon
GACAGGGGCTGCCCGAAGTGGGAGCAGTCCCGAGAGAAGAAAGCGGTAGGACCCAGGCCGGGACCTCCCTGTAGCAGGACAGCGGGAGCAGCGAGACAGCGAGACAGCGGGATCCCGGAGACGCGGGCCGCTGGAAGGCGCGGCGGCGGCGGAGCGAGTGGCGGCCGGCGGCACCATGCGGCGAGGAGGGCTGCTGGAGGTCGCGCTGGCTTTCACCCTGCTCCTCGAGTCCTACACGAGCCATGGGGCGGATGCCAATCTGGAGGCTGGGAGCCTAAAGGAGACCAGAGCCAATCGCGCCAAGAGACGAGGCGGCGGAGGACACGATGCTCTGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302:ENSRNOT00000056022:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.273
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTCCAAGCCGCTAGTCC
R:
TTCAGAGCATCGTGTCCTCCG
Band lengths:
358-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]