MmuINT0064069 @ mm9
Intron Retention
Gene
ENSMUSG00000033831 | Fgb
Description
fibrinogen beta chain [Source:MGI Symbol;Acc:MGI:99501]
Coordinates
chr3:82846227-82847439:-
Coord C1 exon
chr3:82847154-82847439
Coord A exon
chr3:82846557-82847153
Coord C2 exon
chr3:82846227-82846556
Length
597 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCACACTCATCTCCTTTCAGGGT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GTGAATATTGGCTTGGCAATGATAAGATTAGCCAGCTCACCAGGATGGGACCCACAGAACTTCTCATTGAAATGGAGGACTGGAAAGGAGACAAGGTGAAGGCACATTATGGAGGCTTCACGGTACAGAACGAGGCCAGCAAATACCAAGTCTCAGTGAACAAATACAAAGGGACGGCTGGCAACGCCCTCATGGACGGGGCCTCTCAACTGGTGGGGGAGAACAGAACCATGACCATCCACAACGGCATGTTCTTCAGCACGTACGACAGGGACAACGACGGCTG
Seq A exon
GTAAGCACCAAGGTCTTAGCTCCTGTCTTGAATGACCCCACGAATGCGATTGTCTAGCACTGTGGGGGTACCGAATGTTCTAAACAACTGCCCAGACTTGGACACTTCAAGTGTATCAGGCAGCCCCCATCCCGAACTCCTTACGTATCAACGGGAAGCATCCCAGCTATAAGACAGACATGGTTAGTTTCATCTTTCAGATGAAGTTTAGAGATACGAATTTACCCTAAGACAGCTACCCAAAGATAGACCTGTATCTATAGCACAACTCTGAGTTTTGTGTCTCTATATACACATCTGTGTTTTCATTCACTAACGCATCTACGGAAGCCATCATTCCATATCTCAGCGTCTCTCATACTACAGTATCAGTAAAAGAATTCAGTCCCTTCATGATCAGATCAGATAGACCCAGCTGTTTCCCTTTCATGCTATGGGGCAGAGAAGAACTTGGCTGTATTTGGGCTTTACATACAGGATTCCAGGGAAAGAGGTCCACACACAGTGGAGTACAATACTTTCATGCGGGTACTCTCCAACGGACTGAATTGATGGTGGCACTTGTATGGATCATAACTCACACTCATCTCCTTTCAG
Seq C2 exon
GGTAACTACGGATCCAAGAAAACAGTGCTCCAAAGAAGATGGTGGTGGCTGGTGGTATAACAGATGCCATGCAGCCAATCCAAATGGCAGATACTACTGGGGTGGCCTTTACAGCTGGGACATGTCCAAGCACGGCACAGATGATGGTGTGGTGTGGATGAACTGGAAGGGATCGTGGTACTCAATGAGGAGGATGTCTATGAAGATCAGGCCCTTCTTCCCACAGCAATAGTCCCCCCCAAGCACAGACTTTCATTCTTCTATGTCTGACATTTTTTTACATTATGTTATTGGAATTTTCTTTGATACATTATATCCACTAAAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033831-Fgb:NM_181849:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(37.8=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(28.7=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGGTACAGAACGAGGC
R:
ACCACGATCCCTTCCAGTTCA
Band lengths:
350-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: