RnoINT0060686 @ rn6
Intron Retention
Gene
ENSRNOG00000007092 | Fgb
Description
fibrinogen beta chain [Source:RGD Symbol;Acc:2604]
Coordinates
chr2:182028113-182028912:-
Coord C1 exon
chr2:182028627-182028912
Coord A exon
chr2:182028445-182028626
Coord C2 exon
chr2:182028113-182028444
Length
182 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCAAACTCATCTCCTTTCAGGGT
3' ss Score
9.96
Exon sequences
Seq C1 exon
GCGAATATTGGCTTGGCAATGATAAGATTAGCCAGCTCACCAGGATAGGACCCACAGAACTCCTAATCGAAATGGAGGACTGGAAAGGAGACAAGGTGAAGGCACACTATGGAGGCTTCACGGTGCAGACCGAGGCCAACAAGTACCAAGTGTCAGTGAACAAGTACAAAGGGACTGCTGGCAACGCCCTCATGGAAGGGGCCTCTCAGCTGGTGGGGGAGAACAGAACCATGACCATCCACAACGGCATGTTCTTCAGCACCTACGACAGGGACAACGATGGCTG
Seq A exon
GTAAGCTCCGAGGTCTTAGGCTTTACGTACTTAGGCTTTAGGTACTTGGGCTTTACGTACAGGACTCGAGGGAGAGAGTCCCCCACACAACTGAGTACGGTACTTTCTCGTGGGTATTCCCGGGAGATCTGAGTTGACAATGGTACTTGTATGGATCATAACTCAAACTCATCTCCTTTCAG
Seq C2 exon
GGTAACTACAGATCCAAGAAAGCAGTGCTCAAAAGAAGATGGCGGCGGCTGGTGGTATAACAGATGCCATGCAGCCAATCCGAATGGCAGATACTACTGGGGTGGCCTTTACAGCTGGGACATGTCCAAGCACGGCACAGATGATGGTGTGGTGTGGATGAACTGGAAGGGATCGTGGTACTCCATGAGAAGGATGTCTATGAAGATCAGGCCCGTCTTCCCACAGCAATAGTCCCCCAAGCATAGACTTTCAGCCTTCTATGTCTGACATTTTTTACATTATGTTATTGGAATTTTCTTTGATACATTATATCCACTAATGCTCAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007092:ENSRNOT00000009813:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(37.8=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(28.7=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCGAGGCCAACAAGTAC
R:
ATCTGCCATTCGGATTGGCTG
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]