MmuINT0065097 @ mm9
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103043400-103044081:+
Coord C1 exon
chr11:103043400-103043483
Coord A exon
chr11:103043484-103043955
Coord C2 exon
chr11:103043956-103044081
Length
472 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGC
5' ss Score
5.73
3' ss Seq
TCCTTGCGTTGCATCTCCAGATA
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTGGGTGCAGGAGTTCCTCAATGAAGAGAACCGGGGTCTGGATGTCCTGCTTGAGTACCTGGCCTTTGCCCAGTGCTCTGTTGC
Seq A exon
GTAAGCTCCTTGCCCCAGCCCTCATGCCTCCTCTCAGTGTCCTGGTCACACACTCCTGGGTCTCCGCTAGCTCTCTGAGCAGGCACTGATCTCCCCCCCATCCCAGGAAAGCTGGACTTGGCTCTGGGCCATGGATCTTCCGAAGGCCCACCCGTGCCCAGAAGGGACCTTCCTGCTCCCTCACTGTGCTCACCATAGAGCTATGGGTGAGCTGGGTGTGGTACAGATCTCTAATTTCAGAATTTGGGAGGCAGAGACAGGCAGAGCTCTGTGAGTTCTGGCCAGCCTGATCTACATAATGAGAGCCTGTCTCAAGAAACAAGAAACAAAAACAGGAGCCATGAATGATGACAAACTCCTACAGGGATGGCAAACTCTCCTGCAGATCTGTCTTGCTTTGCACGTCCCTCTGTCTCCTCTTTAAGTGTCCCTTGTGGGAGGAGTCTCCAAACTCCTTGCGTTGCATCTCCAG
Seq C2 exon
ATATGACATGGAAAGCACAGACAGTGTGGCCTCTGGTGCAGAGAAGAGCAAGCCCCTGGACCAGTCTGTGGAAGACCTCAGCAAGGCACCTCCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-Fmnl1:NM_001077698:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.502
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(19.2=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(6.8=23.3),PF063718=Drf_GBD=PU(6.1=11.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCAGGAGTTCCTCAATG
R:
TGATGGTCAGGCGACTTTTGG
Band lengths:
207-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: