RnoINT0061628 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91265020-91265704:+
Coord C1 exon
chr10:91265020-91265103
Coord A exon
chr10:91265104-91265578
Coord C2 exon
chr10:91265579-91265704
Length
475 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGC
5' ss Score
5.73
3' ss Seq
TCCTTGCGTCGCATCTCCAGGTA
3' ss Score
9.06
Exon sequences
Seq C1 exon
GTGGGTGCAGGAGTTCCTCAATGAAGAGAACCGAGGTCTGGATGTCCTGCTTGAGTACCTGGCCTTTGCCCAGTGCTCTGTTGC
Seq A exon
GTAAGCTCCTTGCCCCAGCCCTCAAGCTTCCTCTCAGTGTCCTGACCACACATTCCTGGGCCCCAGCTAGACTCCTGAATGGAACTGATCTCTTCCCTCTCCCAGCAAAGCTGGATTTGACCCTGGGCAATGGTTCTTCTGAAGACCTGCCCTTGCCCAGAAGGGATCTTCCTGCTCCTTCACTGTGCACTCCACAGAGCTATGGACGAGCTGGGCGTGGTGCAGATCTCTAATCTCAGAACTTGGGAGGCAGAGACGGGCAAAGCTCTGTGAGTTCTGACCAGCCTGGTCTACATAATGAGAGCCAGTCTCAGGAAACAAAAATCCAGAAATGAGAGCCAAGAATGGATGCAAGCCCCCTCGCCTACGGGGGAGATCTCGCCTGCAGATCTGTTCTGCTTTGCATGTCCCTCTGTCCCCTCTTTAAGTGTCCCTTGTGGTGGGAGCCTCCAAACTCCTTGCGTCGCATCTCCAG
Seq C2 exon
GTATGACATGGAAAGCACAGAAAATGTGGCCTCAGGCACAGAGAAGAACAAGCCCTTGGAACAGTCCGTGGAAGACCTCAGCAAGGCGCCACCCTCATCTGTGCCCAAAAGTCGCCTGACCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.566
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(18.9=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(8.1=27.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCAGGAGTTCCTCAATG
R:
TGATGGTCAGGCGACTTTTGG
Band lengths:
207-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]