MmuINT0067117 @ mm9
Intron Retention
Gene
ENSMUSG00000070880 | Gad1
Description
glutamic acid decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70435219-70437755:+
Coord C1 exon
chr2:70435219-70435326
Coord A exon
chr2:70435327-70437665
Coord C2 exon
chr2:70437666-70437755
Length
2339 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GTCTCCTGGAATTTCTGCAGCCT
3' ss Score
5.77
Exon sequences
Seq C1 exon
GGCACCGTGGGATTTGAAAACCAGATCAACAAATGCCTGGAGCTGGCTGATTACCTCTACGCCAAGATTAAAAACAGAGAAGAGTTTGAGATGGTTTTCGATGGTGAG
Seq A exon
GTAGGTTGTCCCCATGGACTGGACACGTGGTGCTTCCAGGAAAAACACCAAGGAAGTTCCTGGAGCTTGAGATCCTCAATGTCTCATCTCCCTTGAATCAGGACTTGCTTTAACTACTCATGGTCCCTTTCACCCCTGATATCTTTACACAAGCCCAGGTATATGTATACATAAAATAGACTGAGGATGAATAGTAAAGATAATTATTTTAAAGCAACTCTCTGTAGGCAGTTTTGCCATTTTACTAAAGACTAAATTAAATTTGCATGCTAATGAGATGGGGTGCTATTGTTTATTTGTACACAGAGTATGACATTTTGGTTGAATATGTGATACGGCAAGATACGGTATAGTGGTTCTCAGCCTATGCTTGTGACCCCTTCTTCAGATGACTGACCATTCCAAAGGGGCCTAAGACCATGGGAAAACATAGACATTTACAGTATGATTCATAACAGTAGCAAAATTACAGTTACAAAGTAGCAACAAAAATAATTTTATAGTGGTGGTGGGGGTCACCACAGCATGAGGAACTAACTGTATTAAAGGGTCACAGCATTGGGAAGGCCAAGGGCCACTGATGTAGAGGATCCTGGACATTTTTCAGAGTTGAGTGAGATTTTGATCTTATAGTCTTCAGTATAGAGAATGCTGCTTTGCATTAATATATAATATATATAATACACATGGATCGTATATATAGTACAAAATGGCAGAATGTCAATAGGAAAATATTAAATCTTTGTTTTCTCTAATTGAGCCATTTTCTACAAGCACAGAGCAGTTGGTAAGTTCAGTAAGGAGACTGTTGTTCACAGCACGCAGGAATCTGGACTCTGCAGCTATTTGAGGCACCCTTCCTTGACATTATGTGGCACTATATGGCAGGTATGCATGTTGTATGCTCAAAACCAAGTCTGTAGTGAGGTGACATCATACCACACAGGCAAGCACTGCCAGCAAACCCCAGATTCATTACGTGTTTGATTAAGAGTTAAGCTTTGGTCTTTTATAATCCACCCCTGCCCCAACTCAGTCGCACAACCCCATATGACGTAGCAACACAAAGTTAAAGGTGCTGGGCCCTAAAGCACATGGCTCTCAGCCAGCTCTTCGACCTAGAGCGCTTCCCGTGGCAGGTCCTACCCCTTCATTGTTCTTGGCTCTGTCTCGAGTTGGACTCAATCCATGATAAGTGTCTCCCAGGCCCAAGTAGCTTAGAGGTCAGGTATAACCTCACCTTCCAAGACTGGCTCTAAATGAGGGCTTGCTCTCCATGGAATCATGAAGAGAGCCTGATAAACTGCTTCTGCCTACGTTCACATACTCCCCCTATTATACACAGCAAAGCACCTGTCAGCTCAATATTTCCTGAGTGCCACATACAGGGTTATTATTGTCCAAAACAAATATTGTGTCTGCCCTAGTGGAGTTTACAATTGAATAATGAAATATGGACTCGCTGCCAGCCCTGGTAAAAGAAAGCCCTGTTCATACATAAAACAGCTGTTCATAACCTGCTGTAACCCAGCATCAACACAGCTGACATGTGTCTGTTTACCTGTGTGCTTCTCAAGATTCCACCTGAGAGTCAGCAAATGAGCACTCGCCATCAGCATGGGGTGCCCCCACGCCCCGTCTGTGGGACTTCCCTCTACAGGGTTCACACATTCTAGTAGAACATTGAAATGAGACCAGTGATGTCTCCAGCCACCTAGAACAGGAGGATGTGTGTTGTGACAAATGGCCCTTTCACAGGGATCAGAAAACACAGATATTTACGGTATGAGTCGTGATAGTAGCAAAATTGCAGTTATGAAGTAAGTTTATGGTTGGGGGTCCCCACAGCATGAGGAGCTGTATCAAAGGGTCTGCATTCAGAAGGTTGGGAGCCACAGCTTAGGTGCAGGAACTGTGCTAGCAGCATCAAAGGAGAGCGGCAAACCTCTCTCATCAACAAACAAAAAAGTAAGCTAAGCCACTTCCCTGTGCACGGCCTACAGACAGCAAAGTAATGCCCCTTCCTGAGTTACTAAAATGGCCGTCATTTTTATCATTTCAAAGTACAGAAGCAGTAGGCTTGGGGAGTCTAGAAAGTTCATTGGGGTTTGGAGAGTCAGCACTCTTGACAGGAGAAAGTGGATAAGCAGTACTTCCTGTCTGGAGTATTTTTGTACCACATTGCTTTGGAGACGTCATTTAGACACACACACACCCTTTTTAGACTGGGAAAACAAAAAACAAAAACAACTTACTCCAAAAATGCCTCCAGCTTTTGGCCAAGTTCTAACCATTTTCTTTTTGTTTGTTTGTTTGATTGTCTCCTGGAATTTCTGCAG
Seq C2 exon
CCTGAGCACACAAATGTCTGTTTCTGGTACATTCCACAAAGCCTTCGAGGGGTTCCAGATAGCCCTGAGCGACGAGAAAAGCTACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880-Gad1:NM_008077:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(9.3=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=PD(2.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: